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Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis

[Image: see text] Diels–Alder (DA) [4 + 2]-cycloaddition reactions rank among the most powerful transformations in synthetic organic chemistry; biosynthetic examples, however, are few and far between. We report here a heme-binding cyclase, AbmU, that catalyzes an essential [4 + 2] cycloaddition duri...

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Autores principales: Li, Qinglian, Ding, Wenjuan, Tu, Jiajia, Chi, Changbiao, Huang, Hongbo, Ji, Xiaoqi, Yao, Ziwei, Ma, Ming, Ju, Jianhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439702/
https://www.ncbi.nlm.nih.gov/pubmed/32832808
http://dx.doi.org/10.1021/acsomega.0c02776
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author Li, Qinglian
Ding, Wenjuan
Tu, Jiajia
Chi, Changbiao
Huang, Hongbo
Ji, Xiaoqi
Yao, Ziwei
Ma, Ming
Ju, Jianhua
author_facet Li, Qinglian
Ding, Wenjuan
Tu, Jiajia
Chi, Changbiao
Huang, Hongbo
Ji, Xiaoqi
Yao, Ziwei
Ma, Ming
Ju, Jianhua
author_sort Li, Qinglian
collection PubMed
description [Image: see text] Diels–Alder (DA) [4 + 2]-cycloaddition reactions rank among the most powerful transformations in synthetic organic chemistry; biosynthetic examples, however, are few and far between. We report here a heme-binding cyclase, AbmU, that catalyzes an essential [4 + 2] cycloaddition during neoabyssomicin scaffold assembly. In vivo genetic and in vitro biochemical analyses strongly suggest that AbmU catalyzes an intramolecular and stereoselective [4 + 2] cycloaddition to form a spirotetronate skeleton from an acyclic substrate featuring both a terminal 1,3-diene and an exo-methylene group. Biochemical assays and X-ray diffraction analyses reveal that AbmU binds nonspecifically to a heme b cofactor and that this association does not play a catalytic role in AbmU catalysis. A detailed study of the AbmU crystal structure reveals a unique mode of substrate binding and reaction catalysis; His160 forms a H-bond with the C-1 carbonyl O-atom of the acyclic substrate, and the imidazole of the same amino acid directs the tetronate moiety of acyclic substrate toward the terminal Δ(10,11), Δ(12,13)-diene moiety, thereby facilitating intramolecular DA chemistry. Our findings expand upon what is known about mechanistic diversities available to biosynthetic [4 + 2] cyclases and help to lay the foundation for the use of AbmU in possible industrial applications.
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spelling pubmed-74397022020-08-21 Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis Li, Qinglian Ding, Wenjuan Tu, Jiajia Chi, Changbiao Huang, Hongbo Ji, Xiaoqi Yao, Ziwei Ma, Ming Ju, Jianhua ACS Omega [Image: see text] Diels–Alder (DA) [4 + 2]-cycloaddition reactions rank among the most powerful transformations in synthetic organic chemistry; biosynthetic examples, however, are few and far between. We report here a heme-binding cyclase, AbmU, that catalyzes an essential [4 + 2] cycloaddition during neoabyssomicin scaffold assembly. In vivo genetic and in vitro biochemical analyses strongly suggest that AbmU catalyzes an intramolecular and stereoselective [4 + 2] cycloaddition to form a spirotetronate skeleton from an acyclic substrate featuring both a terminal 1,3-diene and an exo-methylene group. Biochemical assays and X-ray diffraction analyses reveal that AbmU binds nonspecifically to a heme b cofactor and that this association does not play a catalytic role in AbmU catalysis. A detailed study of the AbmU crystal structure reveals a unique mode of substrate binding and reaction catalysis; His160 forms a H-bond with the C-1 carbonyl O-atom of the acyclic substrate, and the imidazole of the same amino acid directs the tetronate moiety of acyclic substrate toward the terminal Δ(10,11), Δ(12,13)-diene moiety, thereby facilitating intramolecular DA chemistry. Our findings expand upon what is known about mechanistic diversities available to biosynthetic [4 + 2] cyclases and help to lay the foundation for the use of AbmU in possible industrial applications. American Chemical Society 2020-08-06 /pmc/articles/PMC7439702/ /pubmed/32832808 http://dx.doi.org/10.1021/acsomega.0c02776 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Li, Qinglian
Ding, Wenjuan
Tu, Jiajia
Chi, Changbiao
Huang, Hongbo
Ji, Xiaoqi
Yao, Ziwei
Ma, Ming
Ju, Jianhua
Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title_full Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title_fullStr Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title_full_unstemmed Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title_short Nonspecific Heme-Binding Cyclase, AbmU, Catalyzes [4 + 2] Cycloaddition during Neoabyssomicin Biosynthesis
title_sort nonspecific heme-binding cyclase, abmu, catalyzes [4 + 2] cycloaddition during neoabyssomicin biosynthesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7439702/
https://www.ncbi.nlm.nih.gov/pubmed/32832808
http://dx.doi.org/10.1021/acsomega.0c02776
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