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Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro

Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-...

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Autores principales: Lee, Joongoo, Schwarz, Kevin J., Kim, Do Soon, Moore, Jeffrey S., Jewett, Michael C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7452890/
https://www.ncbi.nlm.nih.gov/pubmed/32855412
http://dx.doi.org/10.1038/s41467-020-18001-x
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author Lee, Joongoo
Schwarz, Kevin J.
Kim, Do Soon
Moore, Jeffrey S.
Jewett, Michael C.
author_facet Lee, Joongoo
Schwarz, Kevin J.
Kim, Do Soon
Moore, Jeffrey S.
Jewett, Michael C.
author_sort Lee, Joongoo
collection PubMed
description Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-tRNA substrates is a bottleneck. Here, we rationally design non-canonical amino acid analogs with extended carbon chains (γ-, δ-, ε-, and ζ-) or cyclic structures (cyclobutane, cyclopentane, and cyclohexane) to improve tRNA charging. We then demonstrate site-specific incorporation of these non-canonical, backbone-extended monomers at the N- and C- terminus of peptides using wild-type and engineered ribosomes. This work expands the scope of ribosome-mediated polymerization, setting the stage for new medicines and materials.
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spelling pubmed-74528902020-09-02 Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro Lee, Joongoo Schwarz, Kevin J. Kim, Do Soon Moore, Jeffrey S. Jewett, Michael C. Nat Commun Article Ribosome-mediated polymerization of backbone-extended monomers into polypeptides is challenging due to their poor compatibility with the translation apparatus, which evolved to use α-L-amino acids. Moreover, mechanisms to acylate (or charge) these monomers to transfer RNAs (tRNAs) to make aminoacyl-tRNA substrates is a bottleneck. Here, we rationally design non-canonical amino acid analogs with extended carbon chains (γ-, δ-, ε-, and ζ-) or cyclic structures (cyclobutane, cyclopentane, and cyclohexane) to improve tRNA charging. We then demonstrate site-specific incorporation of these non-canonical, backbone-extended monomers at the N- and C- terminus of peptides using wild-type and engineered ribosomes. This work expands the scope of ribosome-mediated polymerization, setting the stage for new medicines and materials. Nature Publishing Group UK 2020-08-27 /pmc/articles/PMC7452890/ /pubmed/32855412 http://dx.doi.org/10.1038/s41467-020-18001-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lee, Joongoo
Schwarz, Kevin J.
Kim, Do Soon
Moore, Jeffrey S.
Jewett, Michael C.
Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title_full Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title_fullStr Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title_full_unstemmed Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title_short Ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
title_sort ribosome-mediated polymerization of long chain carbon and cyclic amino acids into peptides in vitro
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7452890/
https://www.ncbi.nlm.nih.gov/pubmed/32855412
http://dx.doi.org/10.1038/s41467-020-18001-x
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