Cargando…
AmpliconReconstructor integrates NGS and optical mapping to resolve the complex structures of focal amplifications
Oncogene amplification, a major driver of cancer pathogenicity, is often mediated through focal amplification of genomic segments. Recent results implicate extrachromosomal DNA (ecDNA) as the primary driver of focal copy number amplification (fCNA) - enabling gene amplification, rapid tumor evolutio...
Autores principales: | Luebeck, Jens, Coruh, Ceyda, Dehkordi, Siavash R., Lange, Joshua T., Turner, Kristen M., Deshpande, Viraj, Pai, Dave A., Zhang, Chao, Rajkumar, Utkrisht, Law, Julie A., Mischel, Paul S., Bafna, Vineet |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7463033/ https://www.ncbi.nlm.nih.gov/pubmed/32873787 http://dx.doi.org/10.1038/s41467-020-18099-z |
Ejemplares similares
-
EcSeg: Semantic Segmentation of Metaphase Images Containing Extrachromosomal DNA
por: Rajkumar, Utkrisht, et al.
Publicado: (2019) -
Exploring the landscape of focal amplifications in cancer using AmpliconArchitect
por: Deshpande, Viraj, et al.
Publicado: (2019) -
ViFi: accurate detection of viral integration and mRNA fusion reveals indiscriminate and unregulated transcription in proximal genomic regions in cervical cancer
por: Nguyen, Nam-phuong D, et al.
Publicado: (2018) -
FaNDOM: Fast nested distance-based seeding of optical maps
por: Raeisi Dehkordi, Siavash, et al.
Publicado: (2021) -
FastViFi: Fast and accurate detection of (Hybrid) Viral DNA and RNA
por: Javadzadeh, Sara, et al.
Publicado: (2022)