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Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide
The title compound, C(27)H(24)N(2)O(5), is a product of the deamination reaction from aza-14-crown-4 ether containing the γ-piperidone subunit. The title molecule contains a 16-membered macrocycle with the conformation of the C—O—C—C—O—C—C—O—C polyether chain being t–g ((-))–t–t–g ((+))–t (t = tran...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472769/ https://www.ncbi.nlm.nih.gov/pubmed/32939299 http://dx.doi.org/10.1107/S2056989020010968 |
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author | Wodajo, Ayalew T. Tran, Thi Thanh Van Truong, Hong Hieu Tskhovrebov, Alexander G. Le, The Duan Khrustalev, Victor N. Le, Tuan Anh |
author_facet | Wodajo, Ayalew T. Tran, Thi Thanh Van Truong, Hong Hieu Tskhovrebov, Alexander G. Le, The Duan Khrustalev, Victor N. Le, Tuan Anh |
author_sort | Wodajo, Ayalew T. |
collection | PubMed |
description | The title compound, C(27)H(24)N(2)O(5), is a product of the deamination reaction from aza-14-crown-4 ether containing the γ-piperidone subunit. The title molecule contains a 16-membered macrocycle with the conformation of the C—O—C—C—O—C—C—O—C polyether chain being t–g ((-))–t–t–g ((+))–t (t = trans, 180°; g = gauche, ±60°). The dihedral angle between the planes of the benzene rings fused to the aza-14-crown-4-ether moiety is 31.11 (14)°. The cavity size inside the macrocycle is 4.72 Å. The macrocycle is significantly flattened as a result of the extended conjugated system. Steric repulsion between the pyridylcarboxamide fragment and the benzene ring results in a slight deviation of macrocycle from planarity. The structure also features intramolecular hydrogen bonding, which results in a deviation of the angle between the planes of amide and pyridyl groups from planarity: this angle is 16.32 (18)°. In the crystal, the molecules are linked into infinite zigzag chains via intermolecular C—H⋯π contacts. The chains are bound into layers parallel to (100) by weak intermolecular C—H⋯O hydrogen bonds. |
format | Online Article Text |
id | pubmed-7472769 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-74727692020-09-15 Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide Wodajo, Ayalew T. Tran, Thi Thanh Van Truong, Hong Hieu Tskhovrebov, Alexander G. Le, The Duan Khrustalev, Victor N. Le, Tuan Anh Acta Crystallogr E Crystallogr Commun Research Communications The title compound, C(27)H(24)N(2)O(5), is a product of the deamination reaction from aza-14-crown-4 ether containing the γ-piperidone subunit. The title molecule contains a 16-membered macrocycle with the conformation of the C—O—C—C—O—C—C—O—C polyether chain being t–g ((-))–t–t–g ((+))–t (t = trans, 180°; g = gauche, ±60°). The dihedral angle between the planes of the benzene rings fused to the aza-14-crown-4-ether moiety is 31.11 (14)°. The cavity size inside the macrocycle is 4.72 Å. The macrocycle is significantly flattened as a result of the extended conjugated system. Steric repulsion between the pyridylcarboxamide fragment and the benzene ring results in a slight deviation of macrocycle from planarity. The structure also features intramolecular hydrogen bonding, which results in a deviation of the angle between the planes of amide and pyridyl groups from planarity: this angle is 16.32 (18)°. In the crystal, the molecules are linked into infinite zigzag chains via intermolecular C—H⋯π contacts. The chains are bound into layers parallel to (100) by weak intermolecular C—H⋯O hydrogen bonds. International Union of Crystallography 2020-08-14 /pmc/articles/PMC7472769/ /pubmed/32939299 http://dx.doi.org/10.1107/S2056989020010968 Text en © Wodajo et al. 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Communications Wodajo, Ayalew T. Tran, Thi Thanh Van Truong, Hong Hieu Tskhovrebov, Alexander G. Le, The Duan Khrustalev, Victor N. Le, Tuan Anh Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title | Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title_full | Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title_fullStr | Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title_full_unstemmed | Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title_short | Synthesis by deamination reaction and crystal structure at 120 K of (16Z,19E)-18-oxo-N-(pyridin-2-yl)-6,7,9,10-tetrahydro-18H-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
title_sort | synthesis by deamination reaction and crystal structure at 120 k of (16z,19e)-18-oxo-n-(pyridin-2-yl)-6,7,9,10-tetrahydro-18h-dibenzo[h,o][1,4,7]trioxacyclohexadecine-17-carboxamide |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7472769/ https://www.ncbi.nlm.nih.gov/pubmed/32939299 http://dx.doi.org/10.1107/S2056989020010968 |
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