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Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data

BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare t...

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Autores principales: Yoshii, Keita, Nishiura, Hiroshi, Inoue, Kaoru, Yamaguchi, Takayuki, Hirose, Akihiko
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477879/
https://www.ncbi.nlm.nih.gov/pubmed/32753042
http://dx.doi.org/10.1186/s12976-020-00131-w
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author Yoshii, Keita
Nishiura, Hiroshi
Inoue, Kaoru
Yamaguchi, Takayuki
Hirose, Akihiko
author_facet Yoshii, Keita
Nishiura, Hiroshi
Inoue, Kaoru
Yamaguchi, Takayuki
Hirose, Akihiko
author_sort Yoshii, Keita
collection PubMed
description BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare the performances of various combinations of model exclusion and selection criteria for quantal response data. METHODS: Simulation-based evaluation of model exclusion and selection processes was conducted by comparing validity, reliability, and other model performance parameters. Three different empirical datasets for different chemical substances were analyzed for the assessment, each having different characteristics of the dose-response pattern (i.e. datasets with rich information in high or low response rates, or approximately linear dose-response patterns). RESULTS: The best performing criteria of model exclusion and selection were different across the different datasets. Model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3) did not produce the worst performance, and MA-3 without model exclusion produced the best results among the model averaging. Model exclusion including the use of the Kolmogorov-Smirnov test in advance of model selection did not necessarily improve the validity and reliability of the models. CONCLUSIONS: If a uniform methodological suggestion for the guideline is required to choose the best performing model for exclusion and selection, our results indicate that using MA-3 is the recommended option whenever applicable.
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spelling pubmed-74778792020-09-09 Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data Yoshii, Keita Nishiura, Hiroshi Inoue, Kaoru Yamaguchi, Takayuki Hirose, Akihiko Theor Biol Med Model Research BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare the performances of various combinations of model exclusion and selection criteria for quantal response data. METHODS: Simulation-based evaluation of model exclusion and selection processes was conducted by comparing validity, reliability, and other model performance parameters. Three different empirical datasets for different chemical substances were analyzed for the assessment, each having different characteristics of the dose-response pattern (i.e. datasets with rich information in high or low response rates, or approximately linear dose-response patterns). RESULTS: The best performing criteria of model exclusion and selection were different across the different datasets. Model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3) did not produce the worst performance, and MA-3 without model exclusion produced the best results among the model averaging. Model exclusion including the use of the Kolmogorov-Smirnov test in advance of model selection did not necessarily improve the validity and reliability of the models. CONCLUSIONS: If a uniform methodological suggestion for the guideline is required to choose the best performing model for exclusion and selection, our results indicate that using MA-3 is the recommended option whenever applicable. BioMed Central 2020-08-05 /pmc/articles/PMC7477879/ /pubmed/32753042 http://dx.doi.org/10.1186/s12976-020-00131-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Yoshii, Keita
Nishiura, Hiroshi
Inoue, Kaoru
Yamaguchi, Takayuki
Hirose, Akihiko
Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title_full Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title_fullStr Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title_full_unstemmed Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title_short Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
title_sort simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477879/
https://www.ncbi.nlm.nih.gov/pubmed/32753042
http://dx.doi.org/10.1186/s12976-020-00131-w
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