Cargando…
Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data
BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare t...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477879/ https://www.ncbi.nlm.nih.gov/pubmed/32753042 http://dx.doi.org/10.1186/s12976-020-00131-w |
_version_ | 1783579972437278720 |
---|---|
author | Yoshii, Keita Nishiura, Hiroshi Inoue, Kaoru Yamaguchi, Takayuki Hirose, Akihiko |
author_facet | Yoshii, Keita Nishiura, Hiroshi Inoue, Kaoru Yamaguchi, Takayuki Hirose, Akihiko |
author_sort | Yoshii, Keita |
collection | PubMed |
description | BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare the performances of various combinations of model exclusion and selection criteria for quantal response data. METHODS: Simulation-based evaluation of model exclusion and selection processes was conducted by comparing validity, reliability, and other model performance parameters. Three different empirical datasets for different chemical substances were analyzed for the assessment, each having different characteristics of the dose-response pattern (i.e. datasets with rich information in high or low response rates, or approximately linear dose-response patterns). RESULTS: The best performing criteria of model exclusion and selection were different across the different datasets. Model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3) did not produce the worst performance, and MA-3 without model exclusion produced the best results among the model averaging. Model exclusion including the use of the Kolmogorov-Smirnov test in advance of model selection did not necessarily improve the validity and reliability of the models. CONCLUSIONS: If a uniform methodological suggestion for the guideline is required to choose the best performing model for exclusion and selection, our results indicate that using MA-3 is the recommended option whenever applicable. |
format | Online Article Text |
id | pubmed-7477879 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-74778792020-09-09 Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data Yoshii, Keita Nishiura, Hiroshi Inoue, Kaoru Yamaguchi, Takayuki Hirose, Akihiko Theor Biol Med Model Research BACKGROUND: To employ the benchmark dose (BMD) method in toxicological risk assessment, it is critical to understand how the BMD lower bound for reference dose calculation is selected following statistical fitting procedures of multiple mathematical models. The purpose of this study was to compare the performances of various combinations of model exclusion and selection criteria for quantal response data. METHODS: Simulation-based evaluation of model exclusion and selection processes was conducted by comparing validity, reliability, and other model performance parameters. Three different empirical datasets for different chemical substances were analyzed for the assessment, each having different characteristics of the dose-response pattern (i.e. datasets with rich information in high or low response rates, or approximately linear dose-response patterns). RESULTS: The best performing criteria of model exclusion and selection were different across the different datasets. Model averaging over the three models with the lowest three AIC (Akaike information criteria) values (MA-3) did not produce the worst performance, and MA-3 without model exclusion produced the best results among the model averaging. Model exclusion including the use of the Kolmogorov-Smirnov test in advance of model selection did not necessarily improve the validity and reliability of the models. CONCLUSIONS: If a uniform methodological suggestion for the guideline is required to choose the best performing model for exclusion and selection, our results indicate that using MA-3 is the recommended option whenever applicable. BioMed Central 2020-08-05 /pmc/articles/PMC7477879/ /pubmed/32753042 http://dx.doi.org/10.1186/s12976-020-00131-w Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Yoshii, Keita Nishiura, Hiroshi Inoue, Kaoru Yamaguchi, Takayuki Hirose, Akihiko Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title | Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title_full | Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title_fullStr | Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title_full_unstemmed | Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title_short | Simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
title_sort | simulation-based assessment of model selection criteria during the application of benchmark dose method to quantal response data |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7477879/ https://www.ncbi.nlm.nih.gov/pubmed/32753042 http://dx.doi.org/10.1186/s12976-020-00131-w |
work_keys_str_mv | AT yoshiikeita simulationbasedassessmentofmodelselectioncriteriaduringtheapplicationofbenchmarkdosemethodtoquantalresponsedata AT nishiurahiroshi simulationbasedassessmentofmodelselectioncriteriaduringtheapplicationofbenchmarkdosemethodtoquantalresponsedata AT inouekaoru simulationbasedassessmentofmodelselectioncriteriaduringtheapplicationofbenchmarkdosemethodtoquantalresponsedata AT yamaguchitakayuki simulationbasedassessmentofmodelselectioncriteriaduringtheapplicationofbenchmarkdosemethodtoquantalresponsedata AT hiroseakihiko simulationbasedassessmentofmodelselectioncriteriaduringtheapplicationofbenchmarkdosemethodtoquantalresponsedata |