Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing

BACKGROUND: We benchmarked the hybrid assembly approaches of MaSuRCA, SPAdes, and Unicycler for bacterial pathogens using Illumina and Oxford Nanopore sequencing by determining genome completeness and accuracy, antimicrobial resistance (AMR), virulence potential, multilocus sequence typing (MLST), p...

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Detalles Bibliográficos
Autores principales: Chen, Zhao, Erickson, David L., Meng, Jianghong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7490894/
https://www.ncbi.nlm.nih.gov/pubmed/32928108
http://dx.doi.org/10.1186/s12864-020-07041-8

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7490894/
https://www.ncbi.nlm.nih.gov/pubmed/32928108
http://dx.doi.org/10.1186/s12864-020-07041-8

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