ADEPT: a domain independent sequence alignment strategy for gpu architectures

BACKGROUND: Bioinformatic workflows frequently make use of automated genome assembly and protein clustering tools. At the core of most of these tools, a significant portion of execution time is spent in determining optimal local alignment between two sequences. This task is performed with the Smith-...

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Detalles Bibliográficos
Autores principales: Awan, Muaaz G., Deslippe, Jack, Buluc, Aydin, Selvitopi, Oguz, Hofmeyr, Steven, Oliker, Leonid, Yelick, Katherine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7493400/
https://www.ncbi.nlm.nih.gov/pubmed/32933482
http://dx.doi.org/10.1186/s12859-020-03720-1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7493400/
https://www.ncbi.nlm.nih.gov/pubmed/32933482
http://dx.doi.org/10.1186/s12859-020-03720-1

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