Cargando…

IMPLICON: an ultra-deep sequencing method to uncover DNA methylation at imprinted regions

Genomic imprinting is an epigenetic phenomenon leading to parental allele-specific expression. Dosage of imprinted genes is crucial for normal development and its dysregulation accounts for several human disorders. This unusual expression pattern is mostly dictated by differences in DNA methylation...

Descripción completa

Detalles Bibliográficos
Autores principales:	Klobučar, Tajda, Kreibich, Elisa, Krueger, Felix, Arez, Maria, Pólvora-Brandão, Duarte, von Meyenn, Ferdinand, da Rocha, Simão Teixeira, Eckersley-Maslin, Melanie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Methods Online
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7498334/ https://www.ncbi.nlm.nih.gov/pubmed/32621604 http://dx.doi.org/10.1093/nar/gkaa567

Ejemplares similares

Imprinting fidelity in mouse iPSCs depends on sex of donor cell and medium formulation
por: Arez, Maria, et al.
Publicado: (2022)

Using long-read sequencing to detect imprinted DNA methylation
por: Gigante, Scott, et al.
Publicado: (2019)

Loss of hierarchical imprinting regulation at the Prader–Willi/Angelman syndrome locus in human iPSCs
por: Pólvora-Brandão, Duarte, et al.
Publicado: (2018)

Chromosome-wide identification of novel imprinted genes using microarrays and uniparental disomies
por: Schulz, Reiner, et al.
Publicado: (2006)

Uncovering tissue-specific binding features from differential deep learning
por: Phuycharoen, Mike, et al.
Publicado: (2020)

Uncovering the key dimensions of high-throughput biomolecular data using deep learning
por: Zhang, Shixiong, et al.
Publicado: (2020)

Uncovering signal transduction networks from high-throughput data by integer linear programming
por: Zhao, Xing-Ming, et al.
Publicado: (2008)

A method for targeting a specified segment of DNA to a bacterial microorganelle
por: Otoničar, Jan, et al.
Publicado: (2022)

Dppa2 and Dppa4 directly regulate the Dux-driven zygotic transcriptional program
por: Eckersley-Maslin, Mélanie, et al.
Publicado: (2019)

Nebula: ultra-efficient mapping-free structural variant genotyper
por: Khorsand, Parsoa, et al.
Publicado: (2021)

FLASH: ultra-fast protocol to identify RNA–protein interactions in cells
por: Ilik, Ibrahim Avsar, et al.
Publicado: (2020)

Uncoupling of the dynamics of host–pathogen interaction uncovers new mechanisms of viral interferon antagonism at the single-cell level
por: Rand, Ulfert, et al.
Publicado: (2014)

Regulostat Inferelator: a novel network biology platform to uncover molecular devices that predetermine cellular response phenotypes
por: Ung, Choong Yong, et al.
Publicado: (2019)

m(6)A-express: uncovering complex and condition-specific m(6)A regulation of gene expression
por: Zhang, Teng, et al.
Publicado: (2021)

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets
por: Erbe, Rossin, et al.
Publicado: (2020)

A novel all-in-one conditional knockout system uncovered an essential role of DDX1 in ribosomal RNA processing
por: Suzuki, Teruhiko, et al.
Publicado: (2021)

dropClust: efficient clustering of ultra-large scRNA-seq data
por: Sinha, Debajyoti, et al.
Publicado: (2018)

Rapid and reliable universal cloning of influenza A virus genes by target-primed plasmid amplification
por: Stech, Jürgen, et al.
Publicado: (2008)

An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli
por: Nehring, Ralf B., et al.
Publicado: (2016)

Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
por: Dohm, Juliane C., et al.
Publicado: (2008)

Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes
por: Neuzil, Pavel, et al.
Publicado: (2006)

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
por: Malboeuf, Christine M., et al.
Publicado: (2013)

Theoretical and experimental assessment of degenerate primer tagging in ultra-deep applications of next-generation sequencing
por: Liang, Richard H., et al.
Publicado: (2014)

Single-cell individual full-length mtDNA sequencing by iMiGseq uncovers unexpected heteroplasmy shifts in mtDNA editing
por: Bi, Chongwei, et al.
Publicado: (2023)

Assessing serotonin receptor mRNA editing frequency by a novel ultra high-throughput sequencing method
por: Abbas, Atheir I., et al.
Publicado: (2010)

Ultra-soft X-ray system for imaging the early cellular responses to X-ray induced DNA damage
por: Kochan, Jakub A, et al.
Publicado: (2019)

Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes
por: Ng, Patrick, et al.
Publicado: (2006)

DNA terminal structure-mediated enzymatic reaction for ultra-sensitive discrimination of single nucleotide variations in circulating cell-free DNA
por: Wu, Tongbo, et al.
Publicado: (2018)

Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples
por: Sengupta, Subhajit, et al.
Publicado: (2016)

CRISPR/dual-FRET molecular beacon for sensitive live-cell imaging of non-repetitive genomic loci
por: Mao, Shiqi, et al.
Publicado: (2019)

A CRISPR/molecular beacon hybrid system for live-cell genomic imaging
por: Wu, Xiaotian, et al.
Publicado: (2018)

5-Fluorouracil blocks quorum-sensing of biofilm-embedded methicillin-resistant Staphylococcus aureus in mice
por: Sedlmayer, Ferdinand, et al.
Publicado: (2021)

NetDecoder: a network biology platform that decodes context-specific biological networks and gene activities
por: da Rocha, Edroaldo Lummertz, et al.
Publicado: (2016)

Controlling therapeutic protein expression via inhalation of a butter flavor molecule
por: Bertschi, Adrian, et al.
Publicado: (2023)

BASiNET—BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification
por: Ito, Eric Augusto, et al.
Publicado: (2018)

Expansion microscopy allows high resolution single cell analysis of epigenetic readers
por: Acke, Aline, et al.
Publicado: (2022)

Methylation-Specific MLPA (MS-MLPA): simultaneous detection of CpG methylation and copy number changes of up to 40 sequences
por: Nygren, Anders O. H., et al.
Publicado: (2005)

Determination of organophosphorus in dairy products by graphitic carbon nitride combined molecularly imprinted microspheres with ultra performance liquid chromatography
por: Pan, Yinchuan, et al.
Publicado: (2022)

Hypermethylation and reduced expression of Gtl2, Rian and Mirg at the Dlk1-Dio3 imprinted locus as a marker for poor developmental potential of mouse embryonic stem cells
por: Schacker, Maria, et al.
Publicado: (2020)

Keeping your options open: insights from Dppa2/4 into how epigenetic priming factors promote cell plasticity
por: Eckersley-Maslin, Mélanie A.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_i91lrgu3elrorkasde1n6ddqdp