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The Nubeam reference-free approach to analyze metagenomic sequencing reads

We present Nubeam (nucleotide be a matrix) as a novel reference-free approach to analyze short sequencing reads. Nubeam represents nucleotides by matrices, transforms a read into a product of matrices, and assigns numbers to reads based on the product matrix. Nubeam capitalizes on the noncommutative...

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Detalles Bibliográficos
Autores principales: Dai, Hang, Guan, Yongtao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7545149/
https://www.ncbi.nlm.nih.gov/pubmed/32883749
http://dx.doi.org/10.1101/gr.261750.120