Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis

Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is...

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Autores principales: Ren, Yuan, Yan, Ming, Zhao, Xueqing, Chen, Xuesen, Yuan, Zhaohe
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687398/
https://www.ncbi.nlm.nih.gov/pubmed/33365594
http://dx.doi.org/10.1080/23802359.2019.1638840
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author Ren, Yuan
Yan, Ming
Zhao, Xueqing
Chen, Xuesen
Yuan, Zhaohe
author_facet Ren, Yuan
Yan, Ming
Zhao, Xueqing
Chen, Xuesen
Yuan, Zhaohe
author_sort Ren, Yuan
collection PubMed
description Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is 160,067 bp in length, containing a pair of inverted repeats (IRs) of 26,358 bp, a large single copy (LSC) region of 88,157 bp and a small single copy (SSC) region of 19,194 bp. And, the overall GC content of the cp genome was 36.56%. A total of 110 unique genes were found in the cp genome. 17 genes were duplicated in the IRs, including six protein-coding genes, seven tRNA genes, and four rRNA genes. Fourteen genes contained one intron, whereas three genes (rps12, clpP, and ycf3) contained two introns. The phylogenetic analysis demonstrated a close relationship between M. baccata var. xiaojinensis and Malus hupehensis.
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spelling pubmed-76873982020-12-22 Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis Ren, Yuan Yan, Ming Zhao, Xueqing Chen, Xuesen Yuan, Zhaohe Mitochondrial DNA B Resour Mitogenome Announcement Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is 160,067 bp in length, containing a pair of inverted repeats (IRs) of 26,358 bp, a large single copy (LSC) region of 88,157 bp and a small single copy (SSC) region of 19,194 bp. And, the overall GC content of the cp genome was 36.56%. A total of 110 unique genes were found in the cp genome. 17 genes were duplicated in the IRs, including six protein-coding genes, seven tRNA genes, and four rRNA genes. Fourteen genes contained one intron, whereas three genes (rps12, clpP, and ycf3) contained two introns. The phylogenetic analysis demonstrated a close relationship between M. baccata var. xiaojinensis and Malus hupehensis. Taylor & Francis 2019-07-16 /pmc/articles/PMC7687398/ /pubmed/33365594 http://dx.doi.org/10.1080/23802359.2019.1638840 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Ren, Yuan
Yan, Ming
Zhao, Xueqing
Chen, Xuesen
Yuan, Zhaohe
Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title_full Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title_fullStr Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title_full_unstemmed Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title_short Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
title_sort characterization of the complete chloroplast genome of malus baccata var. xiaojinensis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687398/
https://www.ncbi.nlm.nih.gov/pubmed/33365594
http://dx.doi.org/10.1080/23802359.2019.1638840
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