Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis
Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687398/ https://www.ncbi.nlm.nih.gov/pubmed/33365594 http://dx.doi.org/10.1080/23802359.2019.1638840 |
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author | Ren, Yuan Yan, Ming Zhao, Xueqing Chen, Xuesen Yuan, Zhaohe |
author_facet | Ren, Yuan Yan, Ming Zhao, Xueqing Chen, Xuesen Yuan, Zhaohe |
author_sort | Ren, Yuan |
collection | PubMed |
description | Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is 160,067 bp in length, containing a pair of inverted repeats (IRs) of 26,358 bp, a large single copy (LSC) region of 88,157 bp and a small single copy (SSC) region of 19,194 bp. And, the overall GC content of the cp genome was 36.56%. A total of 110 unique genes were found in the cp genome. 17 genes were duplicated in the IRs, including six protein-coding genes, seven tRNA genes, and four rRNA genes. Fourteen genes contained one intron, whereas three genes (rps12, clpP, and ycf3) contained two introns. The phylogenetic analysis demonstrated a close relationship between M. baccata var. xiaojinensis and Malus hupehensis. |
format | Online Article Text |
id | pubmed-7687398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-76873982020-12-22 Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis Ren, Yuan Yan, Ming Zhao, Xueqing Chen, Xuesen Yuan, Zhaohe Mitochondrial DNA B Resour Mitogenome Announcement Malus baccata var. xiaojinensis belonging to Rosaceae is not only an ornamental tree but also an apple genotype that is highly tolerant to Fe deficiency. In this study, we reported the complete chloroplast (cp) genome of M. baccata var. xiaojinensis using ILLUMINA sequencing. The whole cp genome is 160,067 bp in length, containing a pair of inverted repeats (IRs) of 26,358 bp, a large single copy (LSC) region of 88,157 bp and a small single copy (SSC) region of 19,194 bp. And, the overall GC content of the cp genome was 36.56%. A total of 110 unique genes were found in the cp genome. 17 genes were duplicated in the IRs, including six protein-coding genes, seven tRNA genes, and four rRNA genes. Fourteen genes contained one intron, whereas three genes (rps12, clpP, and ycf3) contained two introns. The phylogenetic analysis demonstrated a close relationship between M. baccata var. xiaojinensis and Malus hupehensis. Taylor & Francis 2019-07-16 /pmc/articles/PMC7687398/ /pubmed/33365594 http://dx.doi.org/10.1080/23802359.2019.1638840 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Ren, Yuan Yan, Ming Zhao, Xueqing Chen, Xuesen Yuan, Zhaohe Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title | Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title_full | Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title_fullStr | Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title_full_unstemmed | Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title_short | Characterization of the complete chloroplast genome of Malus baccata var. xiaojinensis |
title_sort | characterization of the complete chloroplast genome of malus baccata var. xiaojinensis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7687398/ https://www.ncbi.nlm.nih.gov/pubmed/33365594 http://dx.doi.org/10.1080/23802359.2019.1638840 |
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