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MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS

Medulloblastoma relapse (rMB) occurs in 30–40% of patients and is almost universally fatal. Understanding the genomic landscape of rMB, and its relationship to disease characteristics at diagnosis, will be essential to underpin the development of improved therapeutic strategies, delivered at both di...

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Autores principales: Richardson, Stacey, Hill, Rebecca M, Kui, Christopher, Lindsey, Janet C, Grabovska, Yura, Schwalbe, Edward C, Hicks, Debbie, Williamson, Daniel, Crosier, Stephen, Joshi, Abjhit, Wharton, Stephen B, Hansford, Jordan, Pizer, Barry, Vinci, Maria, Mastronuzzi, Angela, Carai, Andrea, Michalski, Anthony, Jacques, Thomas S, Bailey, Simon, Clifford, Steven C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7715322/
http://dx.doi.org/10.1093/neuonc/noaa222.564
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author Richardson, Stacey
Hill, Rebecca M
Kui, Christopher
Lindsey, Janet C
Grabovska, Yura
Schwalbe, Edward C
Hicks, Debbie
Williamson, Daniel
Crosier, Stephen
Joshi, Abjhit
Wharton, Stephen B
Hansford, Jordan
Pizer, Barry
Vinci, Maria
Mastronuzzi, Angela
Carai, Andrea
Michalski, Anthony
Jacques, Thomas S
Bailey, Simon
Clifford, Steven C
author_facet Richardson, Stacey
Hill, Rebecca M
Kui, Christopher
Lindsey, Janet C
Grabovska, Yura
Schwalbe, Edward C
Hicks, Debbie
Williamson, Daniel
Crosier, Stephen
Joshi, Abjhit
Wharton, Stephen B
Hansford, Jordan
Pizer, Barry
Vinci, Maria
Mastronuzzi, Angela
Carai, Andrea
Michalski, Anthony
Jacques, Thomas S
Bailey, Simon
Clifford, Steven C
author_sort Richardson, Stacey
collection PubMed
description Medulloblastoma relapse (rMB) occurs in 30–40% of patients and is almost universally fatal. Understanding the genomic landscape of rMB, and its relationship to disease characteristics at diagnosis, will be essential to underpin the development of improved therapeutic strategies, delivered at both diagnosis and relapse. Utilising NGS and Illumina DNA methylation arrays, we interrogated the molecular landscape of >100 rMBs, alongside matched diagnostic samples (n>80), encompassing molecular subgroup, novel subtypes, copy number (CNV) and mutational variants. Molecular subgroup and novel subtypes were stable over disease-course. The majority of genomic aberrations were also maintained (total arm-level CNVs at relapse, 60% maintained/40% acquired; deleterious/driver mutations, 75% maintained/25% acquired). Importantly, however, the landscape of alterations differed markedly at relapse, through both selective maintenance and acquisition of specific gene and pathway aberrations. For instance, we observed significant enrichment of subgroup-specific events at relapse, including focal CDK6/CDK14 amplifications (4/26 (15%) of MB(Group4)) and CDKN2A/CDKN2B deletions (3/48 (6%) of MB(SHH)). In contrast, mutations in DNA damage response pathways were commonly enriched across all molecular subgroups, most significantly in MB(SHH) (~40% of rMB(SHH); TP53, 9/36 (25%); ATM, 5/36 (14%)). Driver events in rMB are characterised by both selective maintenance and acquisition across disease-course, and together combine to define its actionable genetic landscape. Evaluation of their clinical and biological significance will be essential to establish their potential (i) as biomarkers to direct disease management and (ii) as a basis for therapeutic strategies targeted against medulloblastoma relapse.
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spelling pubmed-77153222020-12-09 MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS Richardson, Stacey Hill, Rebecca M Kui, Christopher Lindsey, Janet C Grabovska, Yura Schwalbe, Edward C Hicks, Debbie Williamson, Daniel Crosier, Stephen Joshi, Abjhit Wharton, Stephen B Hansford, Jordan Pizer, Barry Vinci, Maria Mastronuzzi, Angela Carai, Andrea Michalski, Anthony Jacques, Thomas S Bailey, Simon Clifford, Steven C Neuro Oncol Medulloblastoma (Research) Medulloblastoma relapse (rMB) occurs in 30–40% of patients and is almost universally fatal. Understanding the genomic landscape of rMB, and its relationship to disease characteristics at diagnosis, will be essential to underpin the development of improved therapeutic strategies, delivered at both diagnosis and relapse. Utilising NGS and Illumina DNA methylation arrays, we interrogated the molecular landscape of >100 rMBs, alongside matched diagnostic samples (n>80), encompassing molecular subgroup, novel subtypes, copy number (CNV) and mutational variants. Molecular subgroup and novel subtypes were stable over disease-course. The majority of genomic aberrations were also maintained (total arm-level CNVs at relapse, 60% maintained/40% acquired; deleterious/driver mutations, 75% maintained/25% acquired). Importantly, however, the landscape of alterations differed markedly at relapse, through both selective maintenance and acquisition of specific gene and pathway aberrations. For instance, we observed significant enrichment of subgroup-specific events at relapse, including focal CDK6/CDK14 amplifications (4/26 (15%) of MB(Group4)) and CDKN2A/CDKN2B deletions (3/48 (6%) of MB(SHH)). In contrast, mutations in DNA damage response pathways were commonly enriched across all molecular subgroups, most significantly in MB(SHH) (~40% of rMB(SHH); TP53, 9/36 (25%); ATM, 5/36 (14%)). Driver events in rMB are characterised by both selective maintenance and acquisition across disease-course, and together combine to define its actionable genetic landscape. Evaluation of their clinical and biological significance will be essential to establish their potential (i) as biomarkers to direct disease management and (ii) as a basis for therapeutic strategies targeted against medulloblastoma relapse. Oxford University Press 2020-12-04 /pmc/articles/PMC7715322/ http://dx.doi.org/10.1093/neuonc/noaa222.564 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Neuro-Oncology. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Medulloblastoma (Research)
Richardson, Stacey
Hill, Rebecca M
Kui, Christopher
Lindsey, Janet C
Grabovska, Yura
Schwalbe, Edward C
Hicks, Debbie
Williamson, Daniel
Crosier, Stephen
Joshi, Abjhit
Wharton, Stephen B
Hansford, Jordan
Pizer, Barry
Vinci, Maria
Mastronuzzi, Angela
Carai, Andrea
Michalski, Anthony
Jacques, Thomas S
Bailey, Simon
Clifford, Steven C
MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title_full MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title_fullStr MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title_full_unstemmed MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title_short MBRS-60. THE ACTIONABLE GENOMIC LANDSCAPE OF RELAPSED MEDULLOBLASTOMA IS DEFINED BY MAINTENANCE AND ACQUISITION OF DRIVER EVENTS
title_sort mbrs-60. the actionable genomic landscape of relapsed medulloblastoma is defined by maintenance and acquisition of driver events
topic Medulloblastoma (Research)
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7715322/
http://dx.doi.org/10.1093/neuonc/noaa222.564
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