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Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor

G Protein-Coupled Receptors (GPCRs) mediate intracellular signaling in response to extracellular ligand binding and are the target of one-third of approved drugs. Ligand binding modulates the GPCR molecular free energy landscape by preferentially stabilizing active or inactive conformations that dic...

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Detalles Bibliográficos
Autores principales: Peters, Brandon L., Deng, Jinxia, Ferguson, Andrew L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7725398/
https://www.ncbi.nlm.nih.gov/pubmed/33296400
http://dx.doi.org/10.1371/journal.pone.0243313
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author Peters, Brandon L.
Deng, Jinxia
Ferguson, Andrew L.
author_facet Peters, Brandon L.
Deng, Jinxia
Ferguson, Andrew L.
author_sort Peters, Brandon L.
collection PubMed
description G Protein-Coupled Receptors (GPCRs) mediate intracellular signaling in response to extracellular ligand binding and are the target of one-third of approved drugs. Ligand binding modulates the GPCR molecular free energy landscape by preferentially stabilizing active or inactive conformations that dictate intracellular protein recruitment and downstream signaling. We perform enhanced sampling molecular dynamics simulations to recover the free energy surfaces of a thermostable mutant of the GPCR serotonin receptor 5-HT(2B) in the unliganded form and bound to a lysergic acid diethylamide (LSD) agonist and lisuride antagonist. LSD binding imparts a ∼110 kJ/mol driving force for conformational rearrangement into an active state. The lisuride-bound form is structurally similar to the apo form and only ∼24 kJ/mol more stable. This work quantifies ligand-induced conformational specificity and functional selectivity of 5-HT(2B) and presents a platform for high-throughput virtual screening of ligands and rational engineering of the ligand-bound molecular free energy landscape.
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spelling pubmed-77253982020-12-16 Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor Peters, Brandon L. Deng, Jinxia Ferguson, Andrew L. PLoS One Research Article G Protein-Coupled Receptors (GPCRs) mediate intracellular signaling in response to extracellular ligand binding and are the target of one-third of approved drugs. Ligand binding modulates the GPCR molecular free energy landscape by preferentially stabilizing active or inactive conformations that dictate intracellular protein recruitment and downstream signaling. We perform enhanced sampling molecular dynamics simulations to recover the free energy surfaces of a thermostable mutant of the GPCR serotonin receptor 5-HT(2B) in the unliganded form and bound to a lysergic acid diethylamide (LSD) agonist and lisuride antagonist. LSD binding imparts a ∼110 kJ/mol driving force for conformational rearrangement into an active state. The lisuride-bound form is structurally similar to the apo form and only ∼24 kJ/mol more stable. This work quantifies ligand-induced conformational specificity and functional selectivity of 5-HT(2B) and presents a platform for high-throughput virtual screening of ligands and rational engineering of the ligand-bound molecular free energy landscape. Public Library of Science 2020-12-09 /pmc/articles/PMC7725398/ /pubmed/33296400 http://dx.doi.org/10.1371/journal.pone.0243313 Text en © 2020 Peters et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Peters, Brandon L.
Deng, Jinxia
Ferguson, Andrew L.
Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title_full Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title_fullStr Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title_full_unstemmed Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title_short Free energy calculations of the functional selectivity of 5-HT(2B) G protein-coupled receptor
title_sort free energy calculations of the functional selectivity of 5-ht(2b) g protein-coupled receptor
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7725398/
https://www.ncbi.nlm.nih.gov/pubmed/33296400
http://dx.doi.org/10.1371/journal.pone.0243313
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