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Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak pe...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729054/ https://www.ncbi.nlm.nih.gov/pubmed/33171074 http://dx.doi.org/10.1098/rsif.2020.0690 |
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author | Thompson, R. N. Gilligan, C. A. Cunniffe, N. J. |
author_facet | Thompson, R. N. Gilligan, C. A. Cunniffe, N. J. |
author_sort | Thompson, R. N. |
collection | PubMed |
description | Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak persists beyond the initial stochastic phase. However, an alternative assessment is to predict whether or not initial cases will lead to a severe epidemic in which available control resources are exceeded. We show how this risk can be estimated by considering three practically relevant potential definitions of a severe epidemic; namely, an outbreak in which: (i) a large number of hosts are infected simultaneously; (ii) a large total number of infections occur; and (iii) the pathogen remains in the population for a long period. We show that the probability of a severe epidemic under these definitions often coincides with the standard branching process estimate for the major epidemic probability. However, these practically relevant risk assessments can also be different from the major epidemic probability, as well as from each other. This holds in different epidemiological systems, highlighting that careful consideration of how to classify a severe epidemic is vital for accurate epidemic risk quantification. |
format | Online Article Text |
id | pubmed-7729054 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | The Royal Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-77290542020-12-22 Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic Thompson, R. N. Gilligan, C. A. Cunniffe, N. J. J R Soc Interface Life Sciences–Mathematics interface Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak persists beyond the initial stochastic phase. However, an alternative assessment is to predict whether or not initial cases will lead to a severe epidemic in which available control resources are exceeded. We show how this risk can be estimated by considering three practically relevant potential definitions of a severe epidemic; namely, an outbreak in which: (i) a large number of hosts are infected simultaneously; (ii) a large total number of infections occur; and (iii) the pathogen remains in the population for a long period. We show that the probability of a severe epidemic under these definitions often coincides with the standard branching process estimate for the major epidemic probability. However, these practically relevant risk assessments can also be different from the major epidemic probability, as well as from each other. This holds in different epidemiological systems, highlighting that careful consideration of how to classify a severe epidemic is vital for accurate epidemic risk quantification. The Royal Society 2020-11 2020-11-11 /pmc/articles/PMC7729054/ /pubmed/33171074 http://dx.doi.org/10.1098/rsif.2020.0690 Text en © 2020 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Life Sciences–Mathematics interface Thompson, R. N. Gilligan, C. A. Cunniffe, N. J. Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title | Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title_full | Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title_fullStr | Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title_full_unstemmed | Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title_short | Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic |
title_sort | will an outbreak exceed available resources for control? estimating the risk from invading pathogens using practical definitions of a severe epidemic |
topic | Life Sciences–Mathematics interface |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729054/ https://www.ncbi.nlm.nih.gov/pubmed/33171074 http://dx.doi.org/10.1098/rsif.2020.0690 |
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