Cargando…

Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic

Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak pe...

Descripción completa

Detalles Bibliográficos
Autores principales: Thompson, R. N., Gilligan, C. A., Cunniffe, N. J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729054/
https://www.ncbi.nlm.nih.gov/pubmed/33171074
http://dx.doi.org/10.1098/rsif.2020.0690
_version_ 1783621377126825984
author Thompson, R. N.
Gilligan, C. A.
Cunniffe, N. J.
author_facet Thompson, R. N.
Gilligan, C. A.
Cunniffe, N. J.
author_sort Thompson, R. N.
collection PubMed
description Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak persists beyond the initial stochastic phase. However, an alternative assessment is to predict whether or not initial cases will lead to a severe epidemic in which available control resources are exceeded. We show how this risk can be estimated by considering three practically relevant potential definitions of a severe epidemic; namely, an outbreak in which: (i) a large number of hosts are infected simultaneously; (ii) a large total number of infections occur; and (iii) the pathogen remains in the population for a long period. We show that the probability of a severe epidemic under these definitions often coincides with the standard branching process estimate for the major epidemic probability. However, these practically relevant risk assessments can also be different from the major epidemic probability, as well as from each other. This holds in different epidemiological systems, highlighting that careful consideration of how to classify a severe epidemic is vital for accurate epidemic risk quantification.
format Online
Article
Text
id pubmed-7729054
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher The Royal Society
record_format MEDLINE/PubMed
spelling pubmed-77290542020-12-22 Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic Thompson, R. N. Gilligan, C. A. Cunniffe, N. J. J R Soc Interface Life Sciences–Mathematics interface Forecasting whether or not initial reports of disease will be followed by a severe epidemic is an important component of disease management. Standard epidemic risk estimates involve assuming that infections occur according to a branching process and correspond to the probability that the outbreak persists beyond the initial stochastic phase. However, an alternative assessment is to predict whether or not initial cases will lead to a severe epidemic in which available control resources are exceeded. We show how this risk can be estimated by considering three practically relevant potential definitions of a severe epidemic; namely, an outbreak in which: (i) a large number of hosts are infected simultaneously; (ii) a large total number of infections occur; and (iii) the pathogen remains in the population for a long period. We show that the probability of a severe epidemic under these definitions often coincides with the standard branching process estimate for the major epidemic probability. However, these practically relevant risk assessments can also be different from the major epidemic probability, as well as from each other. This holds in different epidemiological systems, highlighting that careful consideration of how to classify a severe epidemic is vital for accurate epidemic risk quantification. The Royal Society 2020-11 2020-11-11 /pmc/articles/PMC7729054/ /pubmed/33171074 http://dx.doi.org/10.1098/rsif.2020.0690 Text en © 2020 The Authors. http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/http://creativecommons.org/licenses/by/4.0/Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Life Sciences–Mathematics interface
Thompson, R. N.
Gilligan, C. A.
Cunniffe, N. J.
Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title_full Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title_fullStr Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title_full_unstemmed Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title_short Will an outbreak exceed available resources for control? Estimating the risk from invading pathogens using practical definitions of a severe epidemic
title_sort will an outbreak exceed available resources for control? estimating the risk from invading pathogens using practical definitions of a severe epidemic
topic Life Sciences–Mathematics interface
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7729054/
https://www.ncbi.nlm.nih.gov/pubmed/33171074
http://dx.doi.org/10.1098/rsif.2020.0690
work_keys_str_mv AT thompsonrn willanoutbreakexceedavailableresourcesforcontrolestimatingtheriskfrominvadingpathogensusingpracticaldefinitionsofasevereepidemic
AT gilliganca willanoutbreakexceedavailableresourcesforcontrolestimatingtheriskfrominvadingpathogensusingpracticaldefinitionsofasevereepidemic
AT cunniffenj willanoutbreakexceedavailableresourcesforcontrolestimatingtheriskfrominvadingpathogensusingpracticaldefinitionsofasevereepidemic