The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and compris...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799473/ https://www.ncbi.nlm.nih.gov/pubmed/33474426 http://dx.doi.org/10.1080/23802359.2018.1483761 |
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author | Zhang, Yan Chen, Chen |
author_facet | Zhang, Yan Chen, Chen |
author_sort | Zhang, Yan |
collection | PubMed |
description | Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788 bp each, a large single-copy (LSC) region of 84,593 bp, and a small single-copy (SSC) region of 6,944 bp. The total Guanine and Cytosine (GC) content is 38.0%, while the corresponding values of the LSC, SSC, and IR region are 36.3%, 34.5%, and 40.2%, respectively. The chloroplast genome contains 131 genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes. The Maximum-Likelihood Phylogenetic analysis showed a strong sister relationship with F. tataricum in Polygonaceae. Our findings provide a foundation for further investigation of cp genome evolution in F. dibotrys and other higher plants. |
format | Online Article Text |
id | pubmed-7799473 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77994732021-01-19 The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) Zhang, Yan Chen, Chen Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788 bp each, a large single-copy (LSC) region of 84,593 bp, and a small single-copy (SSC) region of 6,944 bp. The total Guanine and Cytosine (GC) content is 38.0%, while the corresponding values of the LSC, SSC, and IR region are 36.3%, 34.5%, and 40.2%, respectively. The chloroplast genome contains 131 genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes. The Maximum-Likelihood Phylogenetic analysis showed a strong sister relationship with F. tataricum in Polygonaceae. Our findings provide a foundation for further investigation of cp genome evolution in F. dibotrys and other higher plants. Taylor & Francis 2018-09-10 /pmc/articles/PMC7799473/ /pubmed/33474426 http://dx.doi.org/10.1080/23802359.2018.1483761 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Zhang, Yan Chen, Chen The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title | The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title_full | The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title_fullStr | The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title_short | The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) |
title_sort | complete chloroplast genome sequence of the medicinal plant fagopyrum dibotrys (polygonaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799473/ https://www.ncbi.nlm.nih.gov/pubmed/33474426 http://dx.doi.org/10.1080/23802359.2018.1483761 |
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