The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)

Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and compris...

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Autores principales: Zhang, Yan, Chen, Chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799473/
https://www.ncbi.nlm.nih.gov/pubmed/33474426
http://dx.doi.org/10.1080/23802359.2018.1483761
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author Zhang, Yan
Chen, Chen
author_facet Zhang, Yan
Chen, Chen
author_sort Zhang, Yan
collection PubMed
description Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788 bp each, a large single-copy (LSC) region of 84,593 bp, and a small single-copy (SSC) region of 6,944 bp. The total Guanine and Cytosine (GC) content is 38.0%, while the corresponding values of the LSC, SSC, and IR region are 36.3%, 34.5%, and 40.2%, respectively. The chloroplast genome contains 131 genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes. The Maximum-Likelihood Phylogenetic analysis showed a strong sister relationship with F. tataricum in Polygonaceae. Our findings provide a foundation for further investigation of cp genome evolution in F. dibotrys and other higher plants.
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spelling pubmed-77994732021-01-19 The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae) Zhang, Yan Chen, Chen Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete chloroplast genome of the Fagopyrum dibotrys has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 159,325 bp in size, and comprises a pair of inverted repeat (IR) regions of 67,788 bp each, a large single-copy (LSC) region of 84,593 bp, and a small single-copy (SSC) region of 6,944 bp. The total Guanine and Cytosine (GC) content is 38.0%, while the corresponding values of the LSC, SSC, and IR region are 36.3%, 34.5%, and 40.2%, respectively. The chloroplast genome contains 131 genes, including 94 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes. The Maximum-Likelihood Phylogenetic analysis showed a strong sister relationship with F. tataricum in Polygonaceae. Our findings provide a foundation for further investigation of cp genome evolution in F. dibotrys and other higher plants. Taylor & Francis 2018-09-10 /pmc/articles/PMC7799473/ /pubmed/33474426 http://dx.doi.org/10.1080/23802359.2018.1483761 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhang, Yan
Chen, Chen
The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title_full The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title_fullStr The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title_full_unstemmed The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title_short The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
title_sort complete chloroplast genome sequence of the medicinal plant fagopyrum dibotrys (polygonaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799473/
https://www.ncbi.nlm.nih.gov/pubmed/33474426
http://dx.doi.org/10.1080/23802359.2018.1483761
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