Cargando…
Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing
The straw-rotting edible fungus Volvariella volvacea is a widely cultivated edible fungus across China and Southeast Asian countries. Three complete mitochondrial genomes of V. volvacea from China, Thailand, and India were determined using the next-generation sequencing technology. The genome sizes...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799644/ https://www.ncbi.nlm.nih.gov/pubmed/33474412 http://dx.doi.org/10.1080/23802359.2018.1511849 |
_version_ | 1783635173715214336 |
---|---|
author | Wan, Jianing Li, Yan Wang, Hong Tang, Lihua Li, Zhengpeng Zhou, Chenli Tan, Qi Bao, Dapeng Yang, Ruiheng |
author_facet | Wan, Jianing Li, Yan Wang, Hong Tang, Lihua Li, Zhengpeng Zhou, Chenli Tan, Qi Bao, Dapeng Yang, Ruiheng |
author_sort | Wan, Jianing |
collection | PubMed |
description | The straw-rotting edible fungus Volvariella volvacea is a widely cultivated edible fungus across China and Southeast Asian countries. Three complete mitochondrial genomes of V. volvacea from China, Thailand, and India were determined using the next-generation sequencing technology. The genome sizes of the three strains (China, Thailand, and India) were 62,541 bp, 64,531 bp, and 65,668 bp with GC contents of 38.46%, 38.56%, and 38.52%, respectively. All the genomes encoded 14 conserved protein-coding genes, the small ribosomal RNA subunits (rns), large ribosomal RNA subunits (rnl), and 23 tRNAs were located on the same strand. In the putative protein-coding genes, four introns were distributed in cox1 in the genomes of V23-1 and V8. 5 introns (four introns invaded into cox1and one intron invaded into cob) were detected in Tai8. The phylogenetic analysis confirmed that V. volvacea was a number of Agaricales. This mitochondrial genome may open new avenues for understanding the phylogeny and evolution of Pluteaceae and Agaricales. |
format | Online Article Text |
id | pubmed-7799644 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-77996442021-01-19 Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing Wan, Jianing Li, Yan Wang, Hong Tang, Lihua Li, Zhengpeng Zhou, Chenli Tan, Qi Bao, Dapeng Yang, Ruiheng Mitochondrial DNA B Resour Mitogenome Announcement The straw-rotting edible fungus Volvariella volvacea is a widely cultivated edible fungus across China and Southeast Asian countries. Three complete mitochondrial genomes of V. volvacea from China, Thailand, and India were determined using the next-generation sequencing technology. The genome sizes of the three strains (China, Thailand, and India) were 62,541 bp, 64,531 bp, and 65,668 bp with GC contents of 38.46%, 38.56%, and 38.52%, respectively. All the genomes encoded 14 conserved protein-coding genes, the small ribosomal RNA subunits (rns), large ribosomal RNA subunits (rnl), and 23 tRNAs were located on the same strand. In the putative protein-coding genes, four introns were distributed in cox1 in the genomes of V23-1 and V8. 5 introns (four introns invaded into cox1and one intron invaded into cob) were detected in Tai8. The phylogenetic analysis confirmed that V. volvacea was a number of Agaricales. This mitochondrial genome may open new avenues for understanding the phylogeny and evolution of Pluteaceae and Agaricales. Taylor & Francis 2018-10-27 /pmc/articles/PMC7799644/ /pubmed/33474412 http://dx.doi.org/10.1080/23802359.2018.1511849 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wan, Jianing Li, Yan Wang, Hong Tang, Lihua Li, Zhengpeng Zhou, Chenli Tan, Qi Bao, Dapeng Yang, Ruiheng Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title | Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title_full | Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title_fullStr | Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title_full_unstemmed | Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title_short | Three complete mitochondrial genomes of straw-rotting edible fungus Volvariella volvacea using next generation sequencing |
title_sort | three complete mitochondrial genomes of straw-rotting edible fungus volvariella volvacea using next generation sequencing |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799644/ https://www.ncbi.nlm.nih.gov/pubmed/33474412 http://dx.doi.org/10.1080/23802359.2018.1511849 |
work_keys_str_mv | AT wanjianing threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT liyan threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT wanghong threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT tanglihua threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT lizhengpeng threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT zhouchenli threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT tanqi threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT baodapeng threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing AT yangruiheng threecompletemitochondrialgenomesofstrawrottingediblefungusvolvariellavolvaceausingnextgenerationsequencing |