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Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae)
Potato (Solanum tuberosum L.), a species of the family Solanaceae, is the fourth most important food crop worldwide. Solanum tuberosum L. cv. Atlantic, a main fried special potato, has a dry matter content of 19%–23% and a starch content of 16.26% in the tuber. In order to support more molecular dat...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808395/ https://www.ncbi.nlm.nih.gov/pubmed/33521272 http://dx.doi.org/10.1080/23802359.2020.1845998 |
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author | Zhang, Jing-Ying Zhang, Jia-Yue Zhao, Yan-Fei Li, Shuang Chen, Shan-Shan Wang, Ya-Ping Mou, Bin Ma, Hao-Ran Han, Zhi-Jun Lu, Yue Han, Yu-Zhu |
author_facet | Zhang, Jing-Ying Zhang, Jia-Yue Zhao, Yan-Fei Li, Shuang Chen, Shan-Shan Wang, Ya-Ping Mou, Bin Ma, Hao-Ran Han, Zhi-Jun Lu, Yue Han, Yu-Zhu |
author_sort | Zhang, Jing-Ying |
collection | PubMed |
description | Potato (Solanum tuberosum L.), a species of the family Solanaceae, is the fourth most important food crop worldwide. Solanum tuberosum L. cv. Atlantic, a main fried special potato, has a dry matter content of 19%–23% and a starch content of 16.26% in the tuber. In order to support more molecular data for the taxony of S. tuberosum, the complete chloroplast (cp) genome sequence of S. tuberosum L. cv. Atlantic was determined using next-generation sequencing. In leaves, the chloroplast genome accounts for 5.49% of the total genome. The entire cp genome was determined to be 155,296 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,737 and 18,373 bp, respectively, which were separated by a pair of 25,593 bp inverted repeat (IR) regions. The genome contained 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.9%. A phylogenetic tree reconstructed by 64 chloroplast genomes reveals that S. tuberosum L. cv. Atlantic is most closely related to Solanum tuberosum L. cv. Desiree. |
format | Online Article Text |
id | pubmed-7808395 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78083952021-01-29 Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) Zhang, Jing-Ying Zhang, Jia-Yue Zhao, Yan-Fei Li, Shuang Chen, Shan-Shan Wang, Ya-Ping Mou, Bin Ma, Hao-Ran Han, Zhi-Jun Lu, Yue Han, Yu-Zhu Mitochondrial DNA B Resour Mitogenome Announcement Potato (Solanum tuberosum L.), a species of the family Solanaceae, is the fourth most important food crop worldwide. Solanum tuberosum L. cv. Atlantic, a main fried special potato, has a dry matter content of 19%–23% and a starch content of 16.26% in the tuber. In order to support more molecular data for the taxony of S. tuberosum, the complete chloroplast (cp) genome sequence of S. tuberosum L. cv. Atlantic was determined using next-generation sequencing. In leaves, the chloroplast genome accounts for 5.49% of the total genome. The entire cp genome was determined to be 155,296 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 85,737 and 18,373 bp, respectively, which were separated by a pair of 25,593 bp inverted repeat (IR) regions. The genome contained 132 genes, including 87 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall GC content of the genome is 37.9%. A phylogenetic tree reconstructed by 64 chloroplast genomes reveals that S. tuberosum L. cv. Atlantic is most closely related to Solanum tuberosum L. cv. Desiree. Taylor & Francis 2021-01-08 /pmc/articles/PMC7808395/ /pubmed/33521272 http://dx.doi.org/10.1080/23802359.2020.1845998 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhang, Jing-Ying Zhang, Jia-Yue Zhao, Yan-Fei Li, Shuang Chen, Shan-Shan Wang, Ya-Ping Mou, Bin Ma, Hao-Ran Han, Zhi-Jun Lu, Yue Han, Yu-Zhu Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title | Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title_full | Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title_fullStr | Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title_short | Characterization of the complete chloroplast genome of the Solanum tuberosum L. cv. Atlantic (Solanaceae) |
title_sort | characterization of the complete chloroplast genome of the solanum tuberosum l. cv. atlantic (solanaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808395/ https://www.ncbi.nlm.nih.gov/pubmed/33521272 http://dx.doi.org/10.1080/23802359.2020.1845998 |
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