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Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses
Dendrites shape information flow in neurons. Yet, there is little consensus on the level of spatial complexity at which they operate. Through carefully chosen parameter fits, solvable in the least-squares sense, we obtain accurate reduced compartmental models at any level of complexity. We show that...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7837682/ https://www.ncbi.nlm.nih.gov/pubmed/33494860 http://dx.doi.org/10.7554/eLife.60936 |
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author | Wybo, Willem AM Jordan, Jakob Ellenberger, Benjamin Marti Mengual, Ulisses Nevian, Thomas Senn, Walter |
author_facet | Wybo, Willem AM Jordan, Jakob Ellenberger, Benjamin Marti Mengual, Ulisses Nevian, Thomas Senn, Walter |
author_sort | Wybo, Willem AM |
collection | PubMed |
description | Dendrites shape information flow in neurons. Yet, there is little consensus on the level of spatial complexity at which they operate. Through carefully chosen parameter fits, solvable in the least-squares sense, we obtain accurate reduced compartmental models at any level of complexity. We show that (back-propagating) action potentials, Ca(2+) spikes, and N-methyl-D-aspartate spikes can all be reproduced with few compartments. We also investigate whether afferent spatial connectivity motifs admit simplification by ablating targeted branches and grouping affected synapses onto the next proximal dendrite. We find that voltage in the remaining branches is reproduced if temporal conductance fluctuations stay below a limit that depends on the average difference in input resistance between the ablated branches and the next proximal dendrite. Furthermore, our methodology fits reduced models directly from experimental data, without requiring morphological reconstructions. We provide software that automatizes the simplification, eliminating a common hurdle toward including dendritic computations in network models. |
format | Online Article Text |
id | pubmed-7837682 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-78376822021-01-27 Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses Wybo, Willem AM Jordan, Jakob Ellenberger, Benjamin Marti Mengual, Ulisses Nevian, Thomas Senn, Walter eLife Neuroscience Dendrites shape information flow in neurons. Yet, there is little consensus on the level of spatial complexity at which they operate. Through carefully chosen parameter fits, solvable in the least-squares sense, we obtain accurate reduced compartmental models at any level of complexity. We show that (back-propagating) action potentials, Ca(2+) spikes, and N-methyl-D-aspartate spikes can all be reproduced with few compartments. We also investigate whether afferent spatial connectivity motifs admit simplification by ablating targeted branches and grouping affected synapses onto the next proximal dendrite. We find that voltage in the remaining branches is reproduced if temporal conductance fluctuations stay below a limit that depends on the average difference in input resistance between the ablated branches and the next proximal dendrite. Furthermore, our methodology fits reduced models directly from experimental data, without requiring morphological reconstructions. We provide software that automatizes the simplification, eliminating a common hurdle toward including dendritic computations in network models. eLife Sciences Publications, Ltd 2021-01-26 /pmc/articles/PMC7837682/ /pubmed/33494860 http://dx.doi.org/10.7554/eLife.60936 Text en © 2021, Wybo et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Wybo, Willem AM Jordan, Jakob Ellenberger, Benjamin Marti Mengual, Ulisses Nevian, Thomas Senn, Walter Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title | Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title_full | Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title_fullStr | Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title_full_unstemmed | Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title_short | Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
title_sort | data-driven reduction of dendritic morphologies with preserved dendro-somatic responses |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7837682/ https://www.ncbi.nlm.nih.gov/pubmed/33494860 http://dx.doi.org/10.7554/eLife.60936 |
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