Cargando…
Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relati...
Autores principales: | , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885198/ https://www.ncbi.nlm.nih.gov/pubmed/33613978 http://dx.doi.org/10.1093/toxres/tfaa099 |
_version_ | 1783651556753670144 |
---|---|
author | Ball, Thomas Barber, Christopher G Cayley, Alex Chilton, Martyn L Foster, Robert Fowkes, Adrian Heghes, Crina Hill, Emma Hill, Natasha Kane, Steven Macmillan, Donna S Myden, Alun Newman, Daniel Polit, Artur Stalford, Susanne A Vessey, Jonathan D |
author_facet | Ball, Thomas Barber, Christopher G Cayley, Alex Chilton, Martyn L Foster, Robert Fowkes, Adrian Heghes, Crina Hill, Emma Hill, Natasha Kane, Steven Macmillan, Donna S Myden, Alun Newman, Daniel Polit, Artur Stalford, Susanne A Vessey, Jonathan D |
author_sort | Ball, Thomas |
collection | PubMed |
description | Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relationships—to construct networks which can be used to make predictions of the likelihood of AOs. The networks of KEs are augmented by data from and knowledge about assays as well as by structure activity relationship predictions linking chemical classes to the observation of KEs. These inputs are combined within a reasoning framework to produce an information-rich display of the relevant knowledge and data and predictions of AOs both in the abstract case and for individual chemicals. Illustrative examples are given for skin sensitization, reprotoxicity and non-genotoxic carcinogenicity. |
format | Online Article Text |
id | pubmed-7885198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-78851982021-02-19 Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge Ball, Thomas Barber, Christopher G Cayley, Alex Chilton, Martyn L Foster, Robert Fowkes, Adrian Heghes, Crina Hill, Emma Hill, Natasha Kane, Steven Macmillan, Donna S Myden, Alun Newman, Daniel Polit, Artur Stalford, Susanne A Vessey, Jonathan D Toxicol Res (Camb) Paper Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relationships—to construct networks which can be used to make predictions of the likelihood of AOs. The networks of KEs are augmented by data from and knowledge about assays as well as by structure activity relationship predictions linking chemical classes to the observation of KEs. These inputs are combined within a reasoning framework to produce an information-rich display of the relevant knowledge and data and predictions of AOs both in the abstract case and for individual chemicals. Illustrative examples are given for skin sensitization, reprotoxicity and non-genotoxic carcinogenicity. Oxford University Press 2021-01-22 /pmc/articles/PMC7885198/ /pubmed/33613978 http://dx.doi.org/10.1093/toxres/tfaa099 Text en © The Author(s) 2021. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Paper Ball, Thomas Barber, Christopher G Cayley, Alex Chilton, Martyn L Foster, Robert Fowkes, Adrian Heghes, Crina Hill, Emma Hill, Natasha Kane, Steven Macmillan, Donna S Myden, Alun Newman, Daniel Polit, Artur Stalford, Susanne A Vessey, Jonathan D Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title | Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title_full | Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title_fullStr | Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title_full_unstemmed | Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title_short | Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge |
title_sort | beyond adverse outcome pathways: making toxicity predictions from event networks, sar models, data and knowledge |
topic | Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885198/ https://www.ncbi.nlm.nih.gov/pubmed/33613978 http://dx.doi.org/10.1093/toxres/tfaa099 |
work_keys_str_mv | AT ballthomas beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT barberchristopherg beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT cayleyalex beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT chiltonmartynl beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT fosterrobert beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT fowkesadrian beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT heghescrina beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT hillemma beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT hillnatasha beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT kanesteven beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT macmillandonnas beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT mydenalun beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT newmandaniel beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT politartur beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT stalfordsusannea beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge AT vesseyjonathand beyondadverseoutcomepathwaysmakingtoxicitypredictionsfromeventnetworkssarmodelsdataandknowledge |