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Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge

Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relati...

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Autores principales: Ball, Thomas, Barber, Christopher G, Cayley, Alex, Chilton, Martyn L, Foster, Robert, Fowkes, Adrian, Heghes, Crina, Hill, Emma, Hill, Natasha, Kane, Steven, Macmillan, Donna S, Myden, Alun, Newman, Daniel, Polit, Artur, Stalford, Susanne A, Vessey, Jonathan D
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885198/
https://www.ncbi.nlm.nih.gov/pubmed/33613978
http://dx.doi.org/10.1093/toxres/tfaa099
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author Ball, Thomas
Barber, Christopher G
Cayley, Alex
Chilton, Martyn L
Foster, Robert
Fowkes, Adrian
Heghes, Crina
Hill, Emma
Hill, Natasha
Kane, Steven
Macmillan, Donna S
Myden, Alun
Newman, Daniel
Polit, Artur
Stalford, Susanne A
Vessey, Jonathan D
author_facet Ball, Thomas
Barber, Christopher G
Cayley, Alex
Chilton, Martyn L
Foster, Robert
Fowkes, Adrian
Heghes, Crina
Hill, Emma
Hill, Natasha
Kane, Steven
Macmillan, Donna S
Myden, Alun
Newman, Daniel
Polit, Artur
Stalford, Susanne A
Vessey, Jonathan D
author_sort Ball, Thomas
collection PubMed
description Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relationships—to construct networks which can be used to make predictions of the likelihood of AOs. The networks of KEs are augmented by data from and knowledge about assays as well as by structure activity relationship predictions linking chemical classes to the observation of KEs. These inputs are combined within a reasoning framework to produce an information-rich display of the relevant knowledge and data and predictions of AOs both in the abstract case and for individual chemicals. Illustrative examples are given for skin sensitization, reprotoxicity and non-genotoxic carcinogenicity.
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spelling pubmed-78851982021-02-19 Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge Ball, Thomas Barber, Christopher G Cayley, Alex Chilton, Martyn L Foster, Robert Fowkes, Adrian Heghes, Crina Hill, Emma Hill, Natasha Kane, Steven Macmillan, Donna S Myden, Alun Newman, Daniel Polit, Artur Stalford, Susanne A Vessey, Jonathan D Toxicol Res (Camb) Paper Adverse outcome pathways have shown themselves to be useful ways of understanding and expressing knowledge about sequences of events that lead to adverse outcomes (AOs) such as toxicity. In this paper we use the building blocks of adverse outcome pathways—namely key events (KEs) and key event relationships—to construct networks which can be used to make predictions of the likelihood of AOs. The networks of KEs are augmented by data from and knowledge about assays as well as by structure activity relationship predictions linking chemical classes to the observation of KEs. These inputs are combined within a reasoning framework to produce an information-rich display of the relevant knowledge and data and predictions of AOs both in the abstract case and for individual chemicals. Illustrative examples are given for skin sensitization, reprotoxicity and non-genotoxic carcinogenicity. Oxford University Press 2021-01-22 /pmc/articles/PMC7885198/ /pubmed/33613978 http://dx.doi.org/10.1093/toxres/tfaa099 Text en © The Author(s) 2021. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Paper
Ball, Thomas
Barber, Christopher G
Cayley, Alex
Chilton, Martyn L
Foster, Robert
Fowkes, Adrian
Heghes, Crina
Hill, Emma
Hill, Natasha
Kane, Steven
Macmillan, Donna S
Myden, Alun
Newman, Daniel
Polit, Artur
Stalford, Susanne A
Vessey, Jonathan D
Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title_full Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title_fullStr Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title_full_unstemmed Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title_short Beyond adverse outcome pathways: making toxicity predictions from event networks, SAR models, data and knowledge
title_sort beyond adverse outcome pathways: making toxicity predictions from event networks, sar models, data and knowledge
topic Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7885198/
https://www.ncbi.nlm.nih.gov/pubmed/33613978
http://dx.doi.org/10.1093/toxres/tfaa099
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