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Active-site loop variations adjust activity and selectivity of the cumene dioxygenase
Active-site loops play essential roles in various catalytically important enzyme properties like activity, selectivity, and substrate scope. However, their high flexibility and diversity makes them challenging to incorporate into rational enzyme engineering strategies. Here, we report the engineerin...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889853/ https://www.ncbi.nlm.nih.gov/pubmed/33597523 http://dx.doi.org/10.1038/s41467-021-21328-8 |
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author | Heinemann, Peter M. Armbruster, Daniel Hauer, Bernhard |
author_facet | Heinemann, Peter M. Armbruster, Daniel Hauer, Bernhard |
author_sort | Heinemann, Peter M. |
collection | PubMed |
description | Active-site loops play essential roles in various catalytically important enzyme properties like activity, selectivity, and substrate scope. However, their high flexibility and diversity makes them challenging to incorporate into rational enzyme engineering strategies. Here, we report the engineering of hot-spots in loops of the cumene dioxygenase from Pseudomonas fluorescens IP01 with high impact on activity, regio- and enantioselectivity. Libraries based on alanine scan, sequence alignments, and deletions along with a novel insertion approach result in up to 16-fold increases in activity and the formation of novel products and enantiomers. CAVER analysis suggests possible increases in the active pocket volume and formation of new active-site tunnels, suggesting additional degrees of freedom of the substrate in the pocket. The combination of identified hot-spots with the Linker In Loop Insertion approach proves to be a valuable addition to future loop engineering approaches for enhanced biocatalysts. |
format | Online Article Text |
id | pubmed-7889853 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78898532021-03-03 Active-site loop variations adjust activity and selectivity of the cumene dioxygenase Heinemann, Peter M. Armbruster, Daniel Hauer, Bernhard Nat Commun Article Active-site loops play essential roles in various catalytically important enzyme properties like activity, selectivity, and substrate scope. However, their high flexibility and diversity makes them challenging to incorporate into rational enzyme engineering strategies. Here, we report the engineering of hot-spots in loops of the cumene dioxygenase from Pseudomonas fluorescens IP01 with high impact on activity, regio- and enantioselectivity. Libraries based on alanine scan, sequence alignments, and deletions along with a novel insertion approach result in up to 16-fold increases in activity and the formation of novel products and enantiomers. CAVER analysis suggests possible increases in the active pocket volume and formation of new active-site tunnels, suggesting additional degrees of freedom of the substrate in the pocket. The combination of identified hot-spots with the Linker In Loop Insertion approach proves to be a valuable addition to future loop engineering approaches for enhanced biocatalysts. Nature Publishing Group UK 2021-02-17 /pmc/articles/PMC7889853/ /pubmed/33597523 http://dx.doi.org/10.1038/s41467-021-21328-8 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Heinemann, Peter M. Armbruster, Daniel Hauer, Bernhard Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title | Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title_full | Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title_fullStr | Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title_full_unstemmed | Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title_short | Active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
title_sort | active-site loop variations adjust activity and selectivity of the cumene dioxygenase |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889853/ https://www.ncbi.nlm.nih.gov/pubmed/33597523 http://dx.doi.org/10.1038/s41467-021-21328-8 |
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