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Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials

We introduce a Bayesian optimization method for estimating the maximum tolerated dose in this article. A number of parametric model-based methods have been proposed to estimate the maximum tolerated dose; however, parametric model-based methods need an assumption that dose–toxicity relationships fol...

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Detalles Bibliográficos
Autores principales: Takahashi, Ami, Suzuki, Taiji
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7910500/
https://www.ncbi.nlm.nih.gov/pubmed/33681528
http://dx.doi.org/10.1016/j.conctc.2021.100753
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author Takahashi, Ami
Suzuki, Taiji
author_facet Takahashi, Ami
Suzuki, Taiji
author_sort Takahashi, Ami
collection PubMed
description We introduce a Bayesian optimization method for estimating the maximum tolerated dose in this article. A number of parametric model-based methods have been proposed to estimate the maximum tolerated dose; however, parametric model-based methods need an assumption that dose–toxicity relationships follow specific theoretical models. This assumption potentially leads to suboptimal dose selections if the dose–toxicity curve is misspecified. Our proposed method is based on a Bayesian optimization framework for finding a global optimizer of unknown functions that are expensive to evaluate while using very few function evaluations. It models dose–toxicity relationships with a nonparametric model; therefore, a more flexible estimation can be realized compared with existing parametric model-based methods. Also, most existing methods rely on point estimates of dose–toxicity curves in their dose selections. In contrast, our proposed method exploits a probabilistic model for an unknown function to determine the next dose candidate without ignoring the uncertainty of posterior while imposing some dose-escalation limitations. We investigate the operating characteristics of our proposed method by comparing them with those of the Bayesian-based continual reassessment method and two different nonparametric methods. Simulation results suggest that our proposed method works successfully in terms of selections of the maximum tolerated dose correctly and safe dose allocations.
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spelling pubmed-79105002021-03-04 Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials Takahashi, Ami Suzuki, Taiji Contemp Clin Trials Commun Research Paper We introduce a Bayesian optimization method for estimating the maximum tolerated dose in this article. A number of parametric model-based methods have been proposed to estimate the maximum tolerated dose; however, parametric model-based methods need an assumption that dose–toxicity relationships follow specific theoretical models. This assumption potentially leads to suboptimal dose selections if the dose–toxicity curve is misspecified. Our proposed method is based on a Bayesian optimization framework for finding a global optimizer of unknown functions that are expensive to evaluate while using very few function evaluations. It models dose–toxicity relationships with a nonparametric model; therefore, a more flexible estimation can be realized compared with existing parametric model-based methods. Also, most existing methods rely on point estimates of dose–toxicity curves in their dose selections. In contrast, our proposed method exploits a probabilistic model for an unknown function to determine the next dose candidate without ignoring the uncertainty of posterior while imposing some dose-escalation limitations. We investigate the operating characteristics of our proposed method by comparing them with those of the Bayesian-based continual reassessment method and two different nonparametric methods. Simulation results suggest that our proposed method works successfully in terms of selections of the maximum tolerated dose correctly and safe dose allocations. Elsevier 2021-02-15 /pmc/articles/PMC7910500/ /pubmed/33681528 http://dx.doi.org/10.1016/j.conctc.2021.100753 Text en © 2021 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Paper
Takahashi, Ami
Suzuki, Taiji
Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title_full Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title_fullStr Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title_full_unstemmed Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title_short Bayesian optimization for estimating the maximum tolerated dose in Phase I clinical trials
title_sort bayesian optimization for estimating the maximum tolerated dose in phase i clinical trials
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7910500/
https://www.ncbi.nlm.nih.gov/pubmed/33681528
http://dx.doi.org/10.1016/j.conctc.2021.100753
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