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Supramolecular Self-Assembly Built by Weak Hydrogen, Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor: Insights from X-ray and Theoretical Studies
[Image: see text] A selective triazole-based COX-2 inhibitor, 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, C(19)H(13)ClFN(3)S(2), has been synthesized, and its crystal structure was determined at 150 K. Single-crystal X-ray diffraction analysis revealed that t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970574/ https://www.ncbi.nlm.nih.gov/pubmed/33748613 http://dx.doi.org/10.1021/acsomega.0c06287 |
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author | Al-Wahaibi, Lamya H. Rahul, Bavanandan Mohamed, Ahmed A. B. Abdelbaky, Mohammed S. M. Garcia-Granda, Santiago El-Emam, Ali A. Percino, M. Judith Thamotharan, Subbiah |
author_facet | Al-Wahaibi, Lamya H. Rahul, Bavanandan Mohamed, Ahmed A. B. Abdelbaky, Mohammed S. M. Garcia-Granda, Santiago El-Emam, Ali A. Percino, M. Judith Thamotharan, Subbiah |
author_sort | Al-Wahaibi, Lamya H. |
collection | PubMed |
description | [Image: see text] A selective triazole-based COX-2 inhibitor, 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, C(19)H(13)ClFN(3)S(2), has been synthesized, and its crystal structure was determined at 150 K. Single-crystal X-ray diffraction analysis revealed that the thiophene ring was disordered over two orientations. The crystal structure is stabilized by weak hydrogen and chalcogen bonds and unorthodox F···π and S···C(π) contacts. These noncovalent interactions cooperatively generate the supramolecular self-assembly in the crystalline state. The Hirshfeld surface and its associated two-dimensional (2D)-fingerprint plots were obtained to analyze the role of different noncovalent interactions in the crystal packing. Further, the enrichment ratio was obtained from different atom···atom pairs to calculate the propensity of these pairs to form noncovalent interactions. The strength of different dimeric motifs formed in the crystal structure and lattice energies was calculated by the PIXEL method. Furthermore, the topological analysis of the charge density of intermolecular interactions was described. A CSD survey of C–H···F hydrogen bond, C–S···Cl chalcogen bond, and unorthodox nonbonded contacts (F···π and S···C(π)) is presented. The title compound possesses selective inhibitory activity against human COX-2 enzyme rather than COX-1. The quantum mechanics (QM) polarized ligand docking analysis was used to predict the binding pose and study the title compound’s selectivity against COX-1/2 enzymes. |
format | Online Article Text |
id | pubmed-7970574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-79705742021-03-19 Supramolecular Self-Assembly Built by Weak Hydrogen, Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor: Insights from X-ray and Theoretical Studies Al-Wahaibi, Lamya H. Rahul, Bavanandan Mohamed, Ahmed A. B. Abdelbaky, Mohammed S. M. Garcia-Granda, Santiago El-Emam, Ali A. Percino, M. Judith Thamotharan, Subbiah ACS Omega [Image: see text] A selective triazole-based COX-2 inhibitor, 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, C(19)H(13)ClFN(3)S(2), has been synthesized, and its crystal structure was determined at 150 K. Single-crystal X-ray diffraction analysis revealed that the thiophene ring was disordered over two orientations. The crystal structure is stabilized by weak hydrogen and chalcogen bonds and unorthodox F···π and S···C(π) contacts. These noncovalent interactions cooperatively generate the supramolecular self-assembly in the crystalline state. The Hirshfeld surface and its associated two-dimensional (2D)-fingerprint plots were obtained to analyze the role of different noncovalent interactions in the crystal packing. Further, the enrichment ratio was obtained from different atom···atom pairs to calculate the propensity of these pairs to form noncovalent interactions. The strength of different dimeric motifs formed in the crystal structure and lattice energies was calculated by the PIXEL method. Furthermore, the topological analysis of the charge density of intermolecular interactions was described. A CSD survey of C–H···F hydrogen bond, C–S···Cl chalcogen bond, and unorthodox nonbonded contacts (F···π and S···C(π)) is presented. The title compound possesses selective inhibitory activity against human COX-2 enzyme rather than COX-1. The quantum mechanics (QM) polarized ligand docking analysis was used to predict the binding pose and study the title compound’s selectivity against COX-1/2 enzymes. American Chemical Society 2021-03-03 /pmc/articles/PMC7970574/ /pubmed/33748613 http://dx.doi.org/10.1021/acsomega.0c06287 Text en © 2021 The Authors. Published by American Chemical Society Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Al-Wahaibi, Lamya H. Rahul, Bavanandan Mohamed, Ahmed A. B. Abdelbaky, Mohammed S. M. Garcia-Granda, Santiago El-Emam, Ali A. Percino, M. Judith Thamotharan, Subbiah Supramolecular Self-Assembly Built by Weak Hydrogen, Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor: Insights from X-ray and Theoretical Studies |
title | Supramolecular Self-Assembly Built by Weak Hydrogen,
Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor:
Insights from X-ray and Theoretical Studies |
title_full | Supramolecular Self-Assembly Built by Weak Hydrogen,
Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor:
Insights from X-ray and Theoretical Studies |
title_fullStr | Supramolecular Self-Assembly Built by Weak Hydrogen,
Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor:
Insights from X-ray and Theoretical Studies |
title_full_unstemmed | Supramolecular Self-Assembly Built by Weak Hydrogen,
Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor:
Insights from X-ray and Theoretical Studies |
title_short | Supramolecular Self-Assembly Built by Weak Hydrogen,
Chalcogen, and Unorthodox Nonbonded Motifs in 4-(4-Chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4H-1,2,4-triazole, a Selective COX-2 Inhibitor:
Insights from X-ray and Theoretical Studies |
title_sort | supramolecular self-assembly built by weak hydrogen,
chalcogen, and unorthodox nonbonded motifs in 4-(4-chlorophenyl)-3-[(4-fluorobenzyl)sulfanyl]-5-(thiophen-2-yl)-4h-1,2,4-triazole, a selective cox-2 inhibitor:
insights from x-ray and theoretical studies |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7970574/ https://www.ncbi.nlm.nih.gov/pubmed/33748613 http://dx.doi.org/10.1021/acsomega.0c06287 |
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