LINflow: a computational pipeline that combines an alignment-free with an alignment-based method to accelerate generation of similarity matrices for prokaryotic genomes

BACKGROUND: Computing genomic similarity between strains is a prerequisite for genome-based prokaryotic classification and identification. Genomic similarity was first computed as Average Nucleotide Identity (ANI) values based on the alignment of genomic fragments. Since this is computationally expe...

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Detalles Bibliográficos
Autores principales: Tian, Long, Mazloom, Reza, Heath, Lenwood S., Vinatzer, Boris A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8000461/
https://www.ncbi.nlm.nih.gov/pubmed/33828908
http://dx.doi.org/10.7717/peerj.10906

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8000461/
https://www.ncbi.nlm.nih.gov/pubmed/33828908
http://dx.doi.org/10.7717/peerj.10906

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