Automated download and clean-up of family-specific databases for kmer-based virus identification

SUMMARY: Here, we present an automated pipeline for Download Of NCBI Entries (DONE) and continuous updating of a local sequence database based on user-specified queries. The database can be created with either protein or nucleotide sequences containing all entries or complete genomes only. The pipel...

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Detalles Bibliográficos
Autores principales: Allesøe, Rosa L, Lemvigh, Camilla K, Phan, My V T, Clausen, Philip T L C, Florensa, Alfred F, Koopmans, Marion P G, Lund, Ole, Cotten, Matthew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Original Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8097684/
https://www.ncbi.nlm.nih.gov/pubmed/33031509
http://dx.doi.org/10.1093/bioinformatics/btaa857

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8097684/
https://www.ncbi.nlm.nih.gov/pubmed/33031509
http://dx.doi.org/10.1093/bioinformatics/btaa857

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