MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads

For detection of clonal outbreaks in clinical settings, we present a complete pipeline that generates a single-nucleotide polymorphisms-distance matrix from a set of sequencing reads. Importantly, the program is able to handle a separate mix of both short reads from the Illumina sequencing platforms...

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Detalles Bibliográficos
Autores principales: Hallgren, Malte B, Overballe-Petersen, Søren, Lund, Ole, Hasman, Henrik, Clausen, Philip T L C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Methods Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8106442/
https://www.ncbi.nlm.nih.gov/pubmed/33981853
http://dx.doi.org/10.1093/biomethods/bpab008

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8106442/
https://www.ncbi.nlm.nih.gov/pubmed/33981853
http://dx.doi.org/10.1093/biomethods/bpab008

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