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Investigating the impact of reference assembly choice on genomic analyses in a cattle breed

BACKGROUND: Reference-guided read alignment and variant genotyping are prone to reference allele bias, particularly for samples that are greatly divergent from the reference genome. A Hereford-based assembly is the widely accepted bovine reference genome. Haplotype-resolved genomes that exceed the c...

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Detalles Bibliográficos
Autores principales:	Lloret-Villas, Audald, Bhati, Meenu, Kadri, Naveen Kumar, Fries, Ruedi, Pausch, Hubert
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8132449/ https://www.ncbi.nlm.nih.gov/pubmed/34011274 http://dx.doi.org/10.1186/s12864-021-07554-w

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