Cargando…

Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses

Infection with human cytomegalovirus (HCMV) can cause severe complications in immunocompromised individuals and congenitally infected children. Characterizing heterogeneous viral populations and their evolution by high-throughput sequencing of clinical specimens requires the accurate assembly of ind...

Descripción completa

Detalles Bibliográficos
Autores principales:	Deng, Zhi-Luo, Dhingra, Akshay, Fritz, Adrian, Götting, Jasper, Münch, Philipp C, Steinbrück, Lars, Schulz, Thomas F, Ganzenmüller, Tina, McHardy, Alice C
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2020
Materias:	Problem Solving Protocol
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8138829/ https://www.ncbi.nlm.nih.gov/pubmed/34020538 http://dx.doi.org/10.1093/bib/bbaa123

Ejemplares similares

Benchmarking cell-type clustering methods for spatially resolved transcriptomics data
por: Cheng, Andrew, et al.
Publicado: (2022)

Community curation of bioinformatics software and data resources
por: Ison, Jon, et al.
Publicado: (2019)

Haploflow: Strain-resolved de novo assembly of viral genomes
por: Fritz, A., et al.
Publicado: (2021)

CRAFT: a bioinformatics software for custom prediction of circular RNA functions
por: Dal Molin, Anna, et al.
Publicado: (2022)

FunRes: resolving tissue-specific functional cell states based on a cell–cell communication network model
por: Jung, Sascha, et al.
Publicado: (2020)

Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes
por: Orozco-Arias, Simon, et al.
Publicado: (2022)

Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks
por: Su, Junhao, et al.
Publicado: (2022)

Critical assessment of pan-genomic analysis of metagenome-assembled genomes
por: Li, Tang, et al.
Publicado: (2022)

ARAMIS: From systematic errors of NGS long reads to accurate assemblies
por: Sacristán-Horcajada, E, et al.
Publicado: (2021)

Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly
por: Beslic, Denis, et al.
Publicado: (2022)

From contigs towards chromosomes: automatic improvement of long read assemblies (ILRA)
por: Ruiz, José Luis, et al.
Publicado: (2023)

Haploflow: strain-resolved de novo assembly of viral genomes
por: Fritz, Adrian, et al.
Publicado: (2021)

Locus-specific expression analysis of transposable elements
por: Schwarz, Robert, et al.
Publicado: (2021)

A universal model of RNA.DNA:DNA triplex formation accurately predicts genome-wide RNA–DNA interactions
por: Warwick, Timothy, et al.
Publicado: (2022)

bulkAnalyseR: an accessible, interactive pipeline for analysing and sharing bulk multi-modal sequencing data
por: Moutsopoulos, Ilias, et al.
Publicado: (2022)

Impact of a novel algorithm designed to reduce T-wave oversensing with the subcutaneous defibrillator in a patient with type I Brugada electrocardiogram
por: Boveda, Serge, et al.
Publicado: (2017)

MathFeature: feature extraction package for DNA, RNA and protein sequences based on mathematical descriptors
por: Bonidia, Robson P, et al.
Publicado: (2021)

FAMetA: a mass isotopologue-based tool for the comprehensive analysis of fatty acid metabolism
por: Alcoriza-Balaguer, María I, et al.
Publicado: (2023)

A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
por: Sathyanarayanan, Anita, et al.
Publicado: (2019)

Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19
por: Tomazou, Marios, et al.
Publicado: (2021)

Beauty and the beat: A complicated case of multifocal ectopic Purkinje-related premature contractions
por: ter Bekke, Rachel M.A., et al.
Publicado: (2018)

Bioinformatics mentorship in a resource limited setting
por: Jjingo, Daudi, et al.
Publicado: (2021)

Privacy preserving validation for multiomic prediction models
por: Ahmed, Talal, et al.
Publicado: (2022)

Addressing noise in co-expression network construction
por: Burns, Joshua J R, et al.
Publicado: (2021)

A new method to accurately identify single nucleotide variants using small FFPE breast samples
por: Fortunato, Angelo, et al.
Publicado: (2021)

MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data
por: Han, Xinyin, et al.
Publicado: (2021)

BioAutoML: automated feature engineering and metalearning to predict noncoding RNAs in bacteria
por: Bonidia, Robson P, et al.
Publicado: (2022)

Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
por: Sidorczuk, Katarzyna, et al.
Publicado: (2022)

Pleuritic Chest Pain; Where Should We Search for?
por: Gharib, Behdad, et al.
Publicado: (2011)

A young man with multiple joint pains and fever: A case with the importance of accurate history taking
por: Sonoda, Kento, et al.
Publicado: (2017)

A 16-year odyssey of cardiac sarcoid masquerading as idiopathic premature ventricular contractions and then arrhythmogenic cardiomyopathy
por: Nakamura, Tomofumi, et al.
Publicado: (2018)

Bundle branch reentry with His dissociation—The His bundle: Bystander or participant?
por: Nageh, Maged F., et al.
Publicado: (2018)

Intermittent loss of capture in a His bundle pacemaker: What is the cause?
por: Padala, Santosh K., et al.
Publicado: (2017)

Pitfalls of pacemaker detection of ventricular high-rate events
por: Mansour, Fadi, et al.
Publicado: (2018)

Successful transseptal puncture and cryoballoon ablation of symptomatic paroxysmal atrial fibrillation via jugular access in a patient with bilateral thrombotic femoral vein occlusion
por: Kox, Thomas, et al.
Publicado: (2019)

Cardiac implantable electronic device malfunction after deceleration injury without obvious chest trauma
por: Barakat, Amr F., et al.
Publicado: (2019)

Clinical problem solving: Maneuvering around a narrow complex tachycardia in a patient with Mustard repair for transposition of the great arteries
por: Jackson, Nicholas, et al.
Publicado: (2016)

Parasternal intercostal approach as an alternative to subxiphoid approach for epicardial catheter ablation: A case report
por: Miyamoto, Koji, et al.
Publicado: (2015)

An unusual ICD shock: What is the mechanism?
por: Gopinathannair, Rakesh, et al.
Publicado: (2015)

Wide complex tachycardia in a patient with pre-excitation: What is the mechanism?
por: Yeo, Colin, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_974fmgfkfi912r9ev70cahpmik