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Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer
The (R)-phenylacetylcarbinol (PAC) batch biotransformation kinetics for partially purified Candida tropicalis TISTR 5350 pyruvate decarboxylase (PDC) were determined to validate a comprehensive mathematical model in 250 mL scale with 250 mM phosphate buffer/pH 7.0. PDC could convert initial 100/120 ...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175490/ https://www.ncbi.nlm.nih.gov/pubmed/34083711 http://dx.doi.org/10.1038/s41598-021-91294-0 |
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author | Khemacheewakul, Julaluk Taesuwan, Siraphat Nunta, Rojarej Techapun, Charin Phimolsiripol, Yuthana Rachtanapun, Pornchai Jantanasakulwong, Kittisak Porninta, Kritsadaporn Sommanee, Sumeth Mahakuntha, Chatchadaporn Chaiyaso, Thanongsak Seesuriyachan, Phisit Reungsang, Alissara Trinh, Ngoc Thao Ngan Wangtueai, Sutee Sommano, Sarana Rose Leksawasdi, Noppol |
author_facet | Khemacheewakul, Julaluk Taesuwan, Siraphat Nunta, Rojarej Techapun, Charin Phimolsiripol, Yuthana Rachtanapun, Pornchai Jantanasakulwong, Kittisak Porninta, Kritsadaporn Sommanee, Sumeth Mahakuntha, Chatchadaporn Chaiyaso, Thanongsak Seesuriyachan, Phisit Reungsang, Alissara Trinh, Ngoc Thao Ngan Wangtueai, Sutee Sommano, Sarana Rose Leksawasdi, Noppol |
author_sort | Khemacheewakul, Julaluk |
collection | PubMed |
description | The (R)-phenylacetylcarbinol (PAC) batch biotransformation kinetics for partially purified Candida tropicalis TISTR 5350 pyruvate decarboxylase (PDC) were determined to validate a comprehensive mathematical model in 250 mL scale with 250 mM phosphate buffer/pH 7.0. PDC could convert initial 100/120 mM benzaldehyde/pyruvate substrates to the statistical significantly highest (p ≤ 0.05) maximum PAC concentration (95.8 ± 0.1 mM) and production rate (0.639 ± 0.001 mM min(−1)). A parameter search strategy aimed at minimizing overall residual sum of square (RSS(T)) based on a system of six ordinary differential equations was applied to PAC biotransformation profiles with initial benzaldehyde/pyruvate concentration of 100/120 and 30/36 mM. Ten important biotransformation kinetic parameters were then elucidated including the zeroth order activation rate constant due to phosphate buffer species (k(a)) of (9.38 ± < 0.01) × 10(–6)% relative PDC activity min(−1) mM(−1). The validation of this model to independent biotransformation kinetics with initial benzaldehyde/pyruvate concentration of 50/60 mM resulted in relatively good fitting with RSS(T), mean sum of square error (MSE), and coefficient of determination (R(2)) values of 662, 17.4, and 0.9863, respectively. |
format | Online Article Text |
id | pubmed-8175490 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-81754902021-06-04 Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer Khemacheewakul, Julaluk Taesuwan, Siraphat Nunta, Rojarej Techapun, Charin Phimolsiripol, Yuthana Rachtanapun, Pornchai Jantanasakulwong, Kittisak Porninta, Kritsadaporn Sommanee, Sumeth Mahakuntha, Chatchadaporn Chaiyaso, Thanongsak Seesuriyachan, Phisit Reungsang, Alissara Trinh, Ngoc Thao Ngan Wangtueai, Sutee Sommano, Sarana Rose Leksawasdi, Noppol Sci Rep Article The (R)-phenylacetylcarbinol (PAC) batch biotransformation kinetics for partially purified Candida tropicalis TISTR 5350 pyruvate decarboxylase (PDC) were determined to validate a comprehensive mathematical model in 250 mL scale with 250 mM phosphate buffer/pH 7.0. PDC could convert initial 100/120 mM benzaldehyde/pyruvate substrates to the statistical significantly highest (p ≤ 0.05) maximum PAC concentration (95.8 ± 0.1 mM) and production rate (0.639 ± 0.001 mM min(−1)). A parameter search strategy aimed at minimizing overall residual sum of square (RSS(T)) based on a system of six ordinary differential equations was applied to PAC biotransformation profiles with initial benzaldehyde/pyruvate concentration of 100/120 and 30/36 mM. Ten important biotransformation kinetic parameters were then elucidated including the zeroth order activation rate constant due to phosphate buffer species (k(a)) of (9.38 ± < 0.01) × 10(–6)% relative PDC activity min(−1) mM(−1). The validation of this model to independent biotransformation kinetics with initial benzaldehyde/pyruvate concentration of 50/60 mM resulted in relatively good fitting with RSS(T), mean sum of square error (MSE), and coefficient of determination (R(2)) values of 662, 17.4, and 0.9863, respectively. Nature Publishing Group UK 2021-06-03 /pmc/articles/PMC8175490/ /pubmed/34083711 http://dx.doi.org/10.1038/s41598-021-91294-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Khemacheewakul, Julaluk Taesuwan, Siraphat Nunta, Rojarej Techapun, Charin Phimolsiripol, Yuthana Rachtanapun, Pornchai Jantanasakulwong, Kittisak Porninta, Kritsadaporn Sommanee, Sumeth Mahakuntha, Chatchadaporn Chaiyaso, Thanongsak Seesuriyachan, Phisit Reungsang, Alissara Trinh, Ngoc Thao Ngan Wangtueai, Sutee Sommano, Sarana Rose Leksawasdi, Noppol Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title | Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title_full | Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title_fullStr | Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title_full_unstemmed | Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title_short | Validation of mathematical model with phosphate activation effect by batch (R)-phenylacetylcarbinol biotransformation process utilizing Candida tropicalis pyruvate decarboxylase in phosphate buffer |
title_sort | validation of mathematical model with phosphate activation effect by batch (r)-phenylacetylcarbinol biotransformation process utilizing candida tropicalis pyruvate decarboxylase in phosphate buffer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8175490/ https://www.ncbi.nlm.nih.gov/pubmed/34083711 http://dx.doi.org/10.1038/s41598-021-91294-0 |
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