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Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditer...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8207200/ https://www.ncbi.nlm.nih.gov/pubmed/34150721 http://dx.doi.org/10.3389/fchem.2021.689731 |
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author | Qiu, Yufan Diao, Hongjuan Zheng, Ying Wu, Ruibo |
author_facet | Qiu, Yufan Diao, Hongjuan Zheng, Ying Wu, Ruibo |
author_sort | Qiu, Yufan |
collection | PubMed |
description | The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditerpenoid. In this work, classical molecular dynamic simulations, metadynamics, and DFT calculations were performed to investigate the protein conformational dynamics, ligand binding poses, and catalytic reaction mechanism in wide-type and mutant CYP76AH1. Our results not only reveal a plausible enzymatic mechanism for mutant CYP76AH1 leading to various products but also provide valuable guidance for rational protein engineering of the CYP76 family. |
format | Online Article Text |
id | pubmed-8207200 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82072002021-06-17 Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 Qiu, Yufan Diao, Hongjuan Zheng, Ying Wu, Ruibo Front Chem Chemistry The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditerpenoid. In this work, classical molecular dynamic simulations, metadynamics, and DFT calculations were performed to investigate the protein conformational dynamics, ligand binding poses, and catalytic reaction mechanism in wide-type and mutant CYP76AH1. Our results not only reveal a plausible enzymatic mechanism for mutant CYP76AH1 leading to various products but also provide valuable guidance for rational protein engineering of the CYP76 family. Frontiers Media S.A. 2021-06-02 /pmc/articles/PMC8207200/ /pubmed/34150721 http://dx.doi.org/10.3389/fchem.2021.689731 Text en Copyright © 2021 Qiu, Diao, Zheng and Wu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Qiu, Yufan Diao, Hongjuan Zheng, Ying Wu, Ruibo Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title | Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title_full | Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title_fullStr | Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title_full_unstemmed | Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title_short | Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 |
title_sort | multiscale simulations on the catalytic plasticity of cyp76ah1 |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8207200/ https://www.ncbi.nlm.nih.gov/pubmed/34150721 http://dx.doi.org/10.3389/fchem.2021.689731 |
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