Cargando…

Multiscale Simulations on the Catalytic Plasticity of CYP76AH1

The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditer...

Descripción completa

Detalles Bibliográficos
Autores principales: Qiu, Yufan, Diao, Hongjuan, Zheng, Ying, Wu, Ruibo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8207200/
https://www.ncbi.nlm.nih.gov/pubmed/34150721
http://dx.doi.org/10.3389/fchem.2021.689731
_version_ 1783708726392258560
author Qiu, Yufan
Diao, Hongjuan
Zheng, Ying
Wu, Ruibo
author_facet Qiu, Yufan
Diao, Hongjuan
Zheng, Ying
Wu, Ruibo
author_sort Qiu, Yufan
collection PubMed
description The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditerpenoid. In this work, classical molecular dynamic simulations, metadynamics, and DFT calculations were performed to investigate the protein conformational dynamics, ligand binding poses, and catalytic reaction mechanism in wide-type and mutant CYP76AH1. Our results not only reveal a plausible enzymatic mechanism for mutant CYP76AH1 leading to various products but also provide valuable guidance for rational protein engineering of the CYP76 family.
format Online
Article
Text
id pubmed-8207200
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-82072002021-06-17 Multiscale Simulations on the Catalytic Plasticity of CYP76AH1 Qiu, Yufan Diao, Hongjuan Zheng, Ying Wu, Ruibo Front Chem Chemistry The catalytic promiscuity and fidelity of cytochrome P450 enzymes are widespread in the skeletal modification of terpenoid natural products and have attracted much attention. CYP76AH1 is involved in key modification reactions in the biosynthetic pathway of tanshinone, a well-known medicinal norditerpenoid. In this work, classical molecular dynamic simulations, metadynamics, and DFT calculations were performed to investigate the protein conformational dynamics, ligand binding poses, and catalytic reaction mechanism in wide-type and mutant CYP76AH1. Our results not only reveal a plausible enzymatic mechanism for mutant CYP76AH1 leading to various products but also provide valuable guidance for rational protein engineering of the CYP76 family. Frontiers Media S.A. 2021-06-02 /pmc/articles/PMC8207200/ /pubmed/34150721 http://dx.doi.org/10.3389/fchem.2021.689731 Text en Copyright © 2021 Qiu, Diao, Zheng and Wu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Qiu, Yufan
Diao, Hongjuan
Zheng, Ying
Wu, Ruibo
Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title_full Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title_fullStr Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title_full_unstemmed Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title_short Multiscale Simulations on the Catalytic Plasticity of CYP76AH1
title_sort multiscale simulations on the catalytic plasticity of cyp76ah1
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8207200/
https://www.ncbi.nlm.nih.gov/pubmed/34150721
http://dx.doi.org/10.3389/fchem.2021.689731
work_keys_str_mv AT qiuyufan multiscalesimulationsonthecatalyticplasticityofcyp76ah1
AT diaohongjuan multiscalesimulationsonthecatalyticplasticityofcyp76ah1
AT zhengying multiscalesimulationsonthecatalyticplasticityofcyp76ah1
AT wuruibo multiscalesimulationsonthecatalyticplasticityofcyp76ah1