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Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water
In the human diet, particularly for most of the vegetarian population, mungbean (Vigna radiata L. Wilczek) is an inexpensive and environmentally friendly source of protein. Being a short-duration crop, mungbean fits well into different cropping systems dominated by staple food crops such as rice and...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8256871/ https://www.ncbi.nlm.nih.gov/pubmed/34234800 http://dx.doi.org/10.3389/fpls.2021.692564 |
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author | Rane, Jagadish Raina, Susheel Kumar Govindasamy, Venkadasamy Bindumadhava, Hanumantharao Hanjagi, Prashantkumar Giri, Rajkumar Jangid, Krishna Kumar Kumar, Mahesh Nair, Ramakrishnan M. |
author_facet | Rane, Jagadish Raina, Susheel Kumar Govindasamy, Venkadasamy Bindumadhava, Hanumantharao Hanjagi, Prashantkumar Giri, Rajkumar Jangid, Krishna Kumar Kumar, Mahesh Nair, Ramakrishnan M. |
author_sort | Rane, Jagadish |
collection | PubMed |
description | In the human diet, particularly for most of the vegetarian population, mungbean (Vigna radiata L. Wilczek) is an inexpensive and environmentally friendly source of protein. Being a short-duration crop, mungbean fits well into different cropping systems dominated by staple food crops such as rice and wheat. Hence, knowing the growth and production pattern of this important legume under various soil moisture conditions gains paramount significance. Toward that end, 24 elite mungbean genotypes were grown with and without water stress for 25 days in a controlled environment. Top view and side view (two) images of all genotypes captured by a high-resolution camera installed in the high-throughput phenomics were analyzed to extract the pertinent parameters associated with plant features. We tested eight different multivariate models employing machine learning algorithms to predict fresh biomass from different features extracted from the images of diverse genotypes in the presence and absence of soil moisture stress. Based on the mean absolute error (MAE), root mean square error (RMSE), and R squared (R(2)) values, which are used to assess the precision of a model, the partial least square (PLS) method among the eight models was selected for the prediction of biomass. The predicted biomass was used to compute the plant growth rates and water-use indices, which were found to be highly promising surrogate traits as they could differentiate the response of genotypes to soil moisture stress more effectively. To the best of our knowledge, this is perhaps the first report stating the use of a phenomics method as a promising tool for assessing growth rates and also the productive use of water in mungbean crop. |
format | Online Article Text |
id | pubmed-8256871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-82568712021-07-06 Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water Rane, Jagadish Raina, Susheel Kumar Govindasamy, Venkadasamy Bindumadhava, Hanumantharao Hanjagi, Prashantkumar Giri, Rajkumar Jangid, Krishna Kumar Kumar, Mahesh Nair, Ramakrishnan M. Front Plant Sci Plant Science In the human diet, particularly for most of the vegetarian population, mungbean (Vigna radiata L. Wilczek) is an inexpensive and environmentally friendly source of protein. Being a short-duration crop, mungbean fits well into different cropping systems dominated by staple food crops such as rice and wheat. Hence, knowing the growth and production pattern of this important legume under various soil moisture conditions gains paramount significance. Toward that end, 24 elite mungbean genotypes were grown with and without water stress for 25 days in a controlled environment. Top view and side view (two) images of all genotypes captured by a high-resolution camera installed in the high-throughput phenomics were analyzed to extract the pertinent parameters associated with plant features. We tested eight different multivariate models employing machine learning algorithms to predict fresh biomass from different features extracted from the images of diverse genotypes in the presence and absence of soil moisture stress. Based on the mean absolute error (MAE), root mean square error (RMSE), and R squared (R(2)) values, which are used to assess the precision of a model, the partial least square (PLS) method among the eight models was selected for the prediction of biomass. The predicted biomass was used to compute the plant growth rates and water-use indices, which were found to be highly promising surrogate traits as they could differentiate the response of genotypes to soil moisture stress more effectively. To the best of our knowledge, this is perhaps the first report stating the use of a phenomics method as a promising tool for assessing growth rates and also the productive use of water in mungbean crop. Frontiers Media S.A. 2021-06-21 /pmc/articles/PMC8256871/ /pubmed/34234800 http://dx.doi.org/10.3389/fpls.2021.692564 Text en Copyright © 2021 Rane, Raina, Govindasamy, Bindumadhava, Hanjagi, Giri, Jangid, Kumar and Nair. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Rane, Jagadish Raina, Susheel Kumar Govindasamy, Venkadasamy Bindumadhava, Hanumantharao Hanjagi, Prashantkumar Giri, Rajkumar Jangid, Krishna Kumar Kumar, Mahesh Nair, Ramakrishnan M. Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title | Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title_full | Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title_fullStr | Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title_full_unstemmed | Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title_short | Use of Phenomics for Differentiation of Mungbean (Vigna radiata L. Wilczek) Genotypes Varying in Growth Rates Per Unit of Water |
title_sort | use of phenomics for differentiation of mungbean (vigna radiata l. wilczek) genotypes varying in growth rates per unit of water |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8256871/ https://www.ncbi.nlm.nih.gov/pubmed/34234800 http://dx.doi.org/10.3389/fpls.2021.692564 |
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