STRONG: metagenomics strain resolution on assembly graphs

We introduce STrain Resolution ON assembly Graphs (STRONG), which identifies strains de novo, from multiple metagenome samples. STRONG performs coassembly, and binning into metagenome assembled genomes (MAGs), and stores the coassembly graph prior to variant simplification. This enables the subgraph...

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Detalles Bibliográficos
Autores principales: Quince, Christopher, Nurk, Sergey, Raguideau, Sebastien, James, Robert, Soyer, Orkun S., Summers, J. Kimberly, Limasset, Antoine, Eren, A. Murat, Chikhi, Rayan, Darling, Aaron E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8311964/
https://www.ncbi.nlm.nih.gov/pubmed/34311761
http://dx.doi.org/10.1186/s13059-021-02419-7

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8311964/
https://www.ncbi.nlm.nih.gov/pubmed/34311761
http://dx.doi.org/10.1186/s13059-021-02419-7

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