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Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction

[Image: see text] Although it is well-known that limited local mutations of enzymes, such as matrix metalloproteinases (MMPs), may change enzyme activity by orders of magnitude as well as its stability, the completely rational design of proteins is still challenging. These local changes alter the el...

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Autores principales: Adams, Ellen M., Pezzotti, Simone, Ahlers, Jonas, Rüttermann, Maximilian, Levin, Maxim, Goldenzweig, Adi, Peleg, Yoav, Fleishman, Sarel J., Sagi, Irit, Havenith, Martina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317155/
https://www.ncbi.nlm.nih.gov/pubmed/34337607
http://dx.doi.org/10.1021/jacsau.1c00155
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author Adams, Ellen M.
Pezzotti, Simone
Ahlers, Jonas
Rüttermann, Maximilian
Levin, Maxim
Goldenzweig, Adi
Peleg, Yoav
Fleishman, Sarel J.
Sagi, Irit
Havenith, Martina
author_facet Adams, Ellen M.
Pezzotti, Simone
Ahlers, Jonas
Rüttermann, Maximilian
Levin, Maxim
Goldenzweig, Adi
Peleg, Yoav
Fleishman, Sarel J.
Sagi, Irit
Havenith, Martina
author_sort Adams, Ellen M.
collection PubMed
description [Image: see text] Although it is well-known that limited local mutations of enzymes, such as matrix metalloproteinases (MMPs), may change enzyme activity by orders of magnitude as well as its stability, the completely rational design of proteins is still challenging. These local changes alter the electrostatic potential and thus local electrostatic fields, which impacts the dynamics of water molecules close the protein surface. Here we show by a combined computational design, experimental, and molecular dynamics (MD) study that local mutations have not only a local but also a global effect on the solvent: In the specific case of the matrix metalloprotease MMP14, we found that the nature of local mutations, coupled with surface morphology, have the ability to influence large patches of the water hydrogen-bonding network at the protein surface, which is correlated with stability. The solvent contribution can be experimentally probed via terahertz (THz) spectroscopy, thus opening the door to the exciting perspective of rational protein design in which a systematic tuning of hydration water properties allows manipulation of protein stability and enzymatic activity.
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spelling pubmed-83171552021-07-28 Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction Adams, Ellen M. Pezzotti, Simone Ahlers, Jonas Rüttermann, Maximilian Levin, Maxim Goldenzweig, Adi Peleg, Yoav Fleishman, Sarel J. Sagi, Irit Havenith, Martina JACS Au [Image: see text] Although it is well-known that limited local mutations of enzymes, such as matrix metalloproteinases (MMPs), may change enzyme activity by orders of magnitude as well as its stability, the completely rational design of proteins is still challenging. These local changes alter the electrostatic potential and thus local electrostatic fields, which impacts the dynamics of water molecules close the protein surface. Here we show by a combined computational design, experimental, and molecular dynamics (MD) study that local mutations have not only a local but also a global effect on the solvent: In the specific case of the matrix metalloprotease MMP14, we found that the nature of local mutations, coupled with surface morphology, have the ability to influence large patches of the water hydrogen-bonding network at the protein surface, which is correlated with stability. The solvent contribution can be experimentally probed via terahertz (THz) spectroscopy, thus opening the door to the exciting perspective of rational protein design in which a systematic tuning of hydration water properties allows manipulation of protein stability and enzymatic activity. American Chemical Society 2021-06-18 /pmc/articles/PMC8317155/ /pubmed/34337607 http://dx.doi.org/10.1021/jacsau.1c00155 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by-nc-nd/4.0/Permits non-commercial access and re-use, provided that author attribution and integrity are maintained; but does not permit creation of adaptations or other derivative works (https://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Adams, Ellen M.
Pezzotti, Simone
Ahlers, Jonas
Rüttermann, Maximilian
Levin, Maxim
Goldenzweig, Adi
Peleg, Yoav
Fleishman, Sarel J.
Sagi, Irit
Havenith, Martina
Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title_full Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title_fullStr Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title_full_unstemmed Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title_short Local Mutations Can Serve as a Game Changer for Global Protein Solvent Interaction
title_sort local mutations can serve as a game changer for global protein solvent interaction
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8317155/
https://www.ncbi.nlm.nih.gov/pubmed/34337607
http://dx.doi.org/10.1021/jacsau.1c00155
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