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Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters

Apart from the classical (experimental) methods, biologically active peptides can be studied via bioinformatics approach, also known as in silico analysis. This study aimed to verify the following research hypothesis: ACE inhibitors and antioxidant peptides can be released from salmon and carp prote...

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Autores principales: Borawska-Dziadkiewicz, Justyna, Darewicz, Małgorzata, Tarczyńska, Anna Sylwia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354434/
https://www.ncbi.nlm.nih.gov/pubmed/34375367
http://dx.doi.org/10.1371/journal.pone.0255969
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author Borawska-Dziadkiewicz, Justyna
Darewicz, Małgorzata
Tarczyńska, Anna Sylwia
author_facet Borawska-Dziadkiewicz, Justyna
Darewicz, Małgorzata
Tarczyńska, Anna Sylwia
author_sort Borawska-Dziadkiewicz, Justyna
collection PubMed
description Apart from the classical (experimental) methods, biologically active peptides can be studied via bioinformatics approach, also known as in silico analysis. This study aimed to verify the following research hypothesis: ACE inhibitors and antioxidant peptides can be released from salmon and carp proteins during simulated in silico human-like gastrointestinal digestion. The potential to release biopeptides was evaluated using the BIOPEP-UWM quantitative criteria including the profile of biological activity, frequency of the occurrence (A)/release (A(E)) of fragments with an ACE inhibitory or antioxidant activity by selected enzymes, and relative frequency of release of bioactive fragments with a given activity by selected enzymes (W). Salmon collagen and myofibrillar proteins of carp turned out to be the best potential source of the searched peptides–ACE inhibitors and antioxidant peptides. Nonetheless, after digestion, the highest numbers of ACE inhibitors and antioxidant peptides were potentially released from the myofibrillar proteins of salmon and carp. Peptide Ranker Score, Pepsite2, and ADMETlab platform were applied to evaluate peptides’ bioactivity potential, their safety and drug-like properties. Among the 63 sequences obtained after the simulated digestion of salmon and carp proteins, 30 were considered potential biopeptides. The amino acid sequences of ACE-inhibiting and antioxidant peptides were predominated by P, G, F, W, R, and L. The predicted high probability of absorption of most analyzed peptides and their low toxicity should be considered as their advantage.
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spelling pubmed-83544342021-08-11 Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters Borawska-Dziadkiewicz, Justyna Darewicz, Małgorzata Tarczyńska, Anna Sylwia PLoS One Research Article Apart from the classical (experimental) methods, biologically active peptides can be studied via bioinformatics approach, also known as in silico analysis. This study aimed to verify the following research hypothesis: ACE inhibitors and antioxidant peptides can be released from salmon and carp proteins during simulated in silico human-like gastrointestinal digestion. The potential to release biopeptides was evaluated using the BIOPEP-UWM quantitative criteria including the profile of biological activity, frequency of the occurrence (A)/release (A(E)) of fragments with an ACE inhibitory or antioxidant activity by selected enzymes, and relative frequency of release of bioactive fragments with a given activity by selected enzymes (W). Salmon collagen and myofibrillar proteins of carp turned out to be the best potential source of the searched peptides–ACE inhibitors and antioxidant peptides. Nonetheless, after digestion, the highest numbers of ACE inhibitors and antioxidant peptides were potentially released from the myofibrillar proteins of salmon and carp. Peptide Ranker Score, Pepsite2, and ADMETlab platform were applied to evaluate peptides’ bioactivity potential, their safety and drug-like properties. Among the 63 sequences obtained after the simulated digestion of salmon and carp proteins, 30 were considered potential biopeptides. The amino acid sequences of ACE-inhibiting and antioxidant peptides were predominated by P, G, F, W, R, and L. The predicted high probability of absorption of most analyzed peptides and their low toxicity should be considered as their advantage. Public Library of Science 2021-08-10 /pmc/articles/PMC8354434/ /pubmed/34375367 http://dx.doi.org/10.1371/journal.pone.0255969 Text en © 2021 Borawska-Dziadkiewicz et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Borawska-Dziadkiewicz, Justyna
Darewicz, Małgorzata
Tarczyńska, Anna Sylwia
Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title_full Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title_fullStr Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title_full_unstemmed Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title_short Properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
title_sort properties of peptides released from salmon and carp via simulated human-like gastrointestinal digestion described applying quantitative parameters
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8354434/
https://www.ncbi.nlm.nih.gov/pubmed/34375367
http://dx.doi.org/10.1371/journal.pone.0255969
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