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Predicting postoperative surgical site infection with administrative data: a random forests algorithm

BACKGROUND: Since primary data collection can be time-consuming and expensive, surgical site infections (SSIs) could ideally be monitored using routinely collected administrative data. We derived and internally validated efficient algorithms to identify SSIs within 30 days after surgery with health...

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Autores principales: Petrosyan, Yelena, Thavorn, Kednapa, Smith, Glenys, Maclure, Malcolm, Preston, Roanne, van Walravan, Carl, Forster, Alan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403439/
https://www.ncbi.nlm.nih.gov/pubmed/34454414
http://dx.doi.org/10.1186/s12874-021-01369-9
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author Petrosyan, Yelena
Thavorn, Kednapa
Smith, Glenys
Maclure, Malcolm
Preston, Roanne
van Walravan, Carl
Forster, Alan J.
author_facet Petrosyan, Yelena
Thavorn, Kednapa
Smith, Glenys
Maclure, Malcolm
Preston, Roanne
van Walravan, Carl
Forster, Alan J.
author_sort Petrosyan, Yelena
collection PubMed
description BACKGROUND: Since primary data collection can be time-consuming and expensive, surgical site infections (SSIs) could ideally be monitored using routinely collected administrative data. We derived and internally validated efficient algorithms to identify SSIs within 30 days after surgery with health administrative data, using Machine Learning algorithms. METHODS: All patients enrolled in the National Surgical Quality Improvement Program from the Ottawa Hospital were linked to administrative datasets in Ontario, Canada. Machine Learning approaches, including a Random Forests algorithm and the high-performance logistic regression, were used to derive parsimonious models to predict SSI status. Finally, a risk score methodology was used to transform the final models into the risk score system. The SSI risk models were validated in the validation datasets. RESULTS: Of 14,351 patients, 795 (5.5%) had an SSI. First, separate predictive models were built for three distinct administrative datasets. The final model, including hospitalization diagnostic, physician diagnostic and procedure codes, demonstrated excellent discrimination (C statistics, 0.91, 95% CI, 0.90–0.92) and calibration (Hosmer-Lemeshow χ(2) statistics, 4.531, p = 0.402). CONCLUSION: We demonstrated that health administrative data can be effectively used to identify SSIs. Machine learning algorithms have shown a high degree of accuracy in predicting postoperative SSIs and can integrate and utilize a large amount of administrative data. External validation of this model is required before it can be routinely used to identify SSIs. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-021-01369-9.
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spelling pubmed-84034392021-08-30 Predicting postoperative surgical site infection with administrative data: a random forests algorithm Petrosyan, Yelena Thavorn, Kednapa Smith, Glenys Maclure, Malcolm Preston, Roanne van Walravan, Carl Forster, Alan J. BMC Med Res Methodol Research BACKGROUND: Since primary data collection can be time-consuming and expensive, surgical site infections (SSIs) could ideally be monitored using routinely collected administrative data. We derived and internally validated efficient algorithms to identify SSIs within 30 days after surgery with health administrative data, using Machine Learning algorithms. METHODS: All patients enrolled in the National Surgical Quality Improvement Program from the Ottawa Hospital were linked to administrative datasets in Ontario, Canada. Machine Learning approaches, including a Random Forests algorithm and the high-performance logistic regression, were used to derive parsimonious models to predict SSI status. Finally, a risk score methodology was used to transform the final models into the risk score system. The SSI risk models were validated in the validation datasets. RESULTS: Of 14,351 patients, 795 (5.5%) had an SSI. First, separate predictive models were built for three distinct administrative datasets. The final model, including hospitalization diagnostic, physician diagnostic and procedure codes, demonstrated excellent discrimination (C statistics, 0.91, 95% CI, 0.90–0.92) and calibration (Hosmer-Lemeshow χ(2) statistics, 4.531, p = 0.402). CONCLUSION: We demonstrated that health administrative data can be effectively used to identify SSIs. Machine learning algorithms have shown a high degree of accuracy in predicting postoperative SSIs and can integrate and utilize a large amount of administrative data. External validation of this model is required before it can be routinely used to identify SSIs. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12874-021-01369-9. BioMed Central 2021-08-28 /pmc/articles/PMC8403439/ /pubmed/34454414 http://dx.doi.org/10.1186/s12874-021-01369-9 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Petrosyan, Yelena
Thavorn, Kednapa
Smith, Glenys
Maclure, Malcolm
Preston, Roanne
van Walravan, Carl
Forster, Alan J.
Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title_full Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title_fullStr Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title_full_unstemmed Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title_short Predicting postoperative surgical site infection with administrative data: a random forests algorithm
title_sort predicting postoperative surgical site infection with administrative data: a random forests algorithm
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8403439/
https://www.ncbi.nlm.nih.gov/pubmed/34454414
http://dx.doi.org/10.1186/s12874-021-01369-9
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