Cargando…

A novel automated image analysis pipeline for quantifying morphological changes to the endoplasmic reticulum in cultured human cells

BACKGROUND: In mammalian cells the endoplasmic reticulum (ER) comprises a highly complex reticular morphology that is spread throughout the cytoplasm. This organelle is of particular interest to biologists, as its dysfunction is associated with numerous diseases, which often manifest themselves as c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Garcia-Pardo, M. Elena, Simpson, Jeremy C., O’Sullivan, Niamh C.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8425006/ https://www.ncbi.nlm.nih.gov/pubmed/34496765 http://dx.doi.org/10.1186/s12859-021-04334-x

Ejemplares similares

SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences
por: Barreto Ortiz, Joan, et al.
Publicado: (2023)

LV-pIN-KDEL: a novel lentiviral vector demonstrates the morphology, dynamics and continuity of the endoplasmic reticulum in live neurones
por: Jones, Vicky C, et al.
Publicado: (2008)

A microplate technique to simultaneously assay calcium accumulation in endoplasmic reticulum and SERCA release of inorganic phosphate
por: McMullen, David C, et al.
Publicado: (2012)

An image analysis pipeline for automated classification of imaging light conditions and for quantification of wheat canopy cover time series in field phenotyping
por: Yu, Kang, et al.
Publicado: (2017)

A high-throughput screening method to identify proteins involved in unfolded protein response of the endoplasmic reticulum in plants
por: Alcântara, André, et al.
Publicado: (2020)

A quantitative image analysis pipeline for the characterization of filamentous fungal morphologies as a tool to uncover targets for morphology engineering: a case study using aplD in Aspergillus niger
por: Cairns, Timothy C., et al.
Publicado: (2019)

NeurodegenERation: The Central Role for ER Contacts in Neuronal Function and Axonopathy, Lessons From Hereditary Spastic Paraplegias and Related Diseases
por: Fowler, Philippa C., et al.
Publicado: (2019)

Modeling of axonal endoplasmic reticulum network by spastic paraplegia proteins
por: Yalçın, Belgin, et al.
Publicado: (2017)

A Pipeline for Natural Small Molecule Inhibitors of Endoplasmic Reticulum Stress
por: Correia da Silva, Daniela, et al.
Publicado: (2022)

Reticulon-like-1, the Drosophila orthologue of the Hereditary Spastic Paraplegia gene reticulon 2, is required for organization of endoplasmic reticulum and of distal motor axons
por: O'Sullivan, Niamh C., et al.
Publicado: (2012)

H&E image analysis pipeline for quantifying morphological features
por: Ariotta, Valeria, et al.
Publicado: (2023)

CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
por: White, James Robert, et al.
Publicado: (2013)

Odyssey: a semi-automated pipeline for phasing, imputation, and analysis of genome-wide genetic data
por: Eller, Ryan J., et al.
Publicado: (2019)

Elucidating the Morphology of the Endoplasmic Reticulum: Puzzles and Perspectives
por: Lipowsky, Reinhard, et al.
Publicado: (2023)

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
por: Yu, Chenggang, et al.
Publicado: (2008)

Effective automated pipeline for 3D reconstruction of synapses based on deep learning
por: Xiao, Chi, et al.
Publicado: (2018)

The Rat Grimace Scale: A partially automated method for quantifying pain in the laboratory rat via facial expressions
por: Sotocinal, Susana G, et al.
Publicado: (2011)

Nodal modulator (NOMO) is required to sustain endoplasmic reticulum morphology
por: Amaya, Catherine, et al.
Publicado: (2021)

Automated quantification of fluorescence and morphological changes in pretreated wood cells by fluorescence macroscopy
por: Audibert, Edwige, et al.
Publicado: (2023)

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads
por: Martin, Jeffrey, et al.
Publicado: (2010)

VariantMetaCaller: automated fusion of variant calling pipelines for quantitative, precision-based filtering
por: Gézsi, András, et al.
Publicado: (2015)

PHASE CONTRAST OBSERVATIONS OF THE ENDOPLASMIC RETICULUM IN LIVING TISSUE CULTURES
por: Rose, George G., et al.
Publicado: (1960)

An optimized pipeline for live imaging whole Arabidopsis leaves at cellular resolution
por: Harline, Kate, et al.
Publicado: (2023)

An Automated Perifusion System for Modifying Cell Culture Conditions over Time
por: Whitticar, Nicholas B., et al.
Publicado: (2016)

Atlastin-1 regulates morphology and function of endoplasmic reticulum in dendrites
por: Liu, Xianzhuang, et al.
Publicado: (2019)

Quantifying myosin light chain phosphorylation in single adherent cells with automated fluorescence microscopy
por: Bhadriraju, Kiran, et al.
Publicado: (2007)

Depletion of a Toxoplasma porin leads to defects in mitochondrial morphology and contacts with the endoplasmic reticulum
por: Mallo, Natalia, et al.
Publicado: (2021)

THE ENDOPLASMIC RETICULUM
por: Palade, George E.
Publicado: (1956)

An Analysis Pipeline for Genome-wide Association Studies
por: Stefanov, Stefan, et al.
Publicado: (2008)

canSAR chemistry registration and standardization pipeline
por: Dolciami, Daniela, et al.
Publicado: (2022)

A straightforward and efficient analytical pipeline for metaproteome characterization
por: Tanca, Alessandro, et al.
Publicado: (2014)

Intertwined and Finely Balanced: Endoplasmic Reticulum Morphology, Dynamics, Function, and Diseases
por: Perkins, Hannah T., et al.
Publicado: (2021)

Deep Learning-Based Morphological Classification of Endoplasmic Reticulum Under Stress
por: Guo, Yuanhao, et al.
Publicado: (2022)

Morphological Heterogeneity of the Endoplasmic Reticulum within Neurons and Its Implications in Neurodegeneration
por: Sree, Sreesha, et al.
Publicado: (2021)

An open source chemical structure curation pipeline using RDKit
por: Bento, A. Patrícia, et al.
Publicado: (2020)

Velo-Predictor: an ensemble learning pipeline for RNA velocity prediction
por: Wang, Xin, et al.
Publicado: (2021)

An automated haematology analyzer XN-30 distinguishes developmental stages of falciparum malaria parasite cultured in vitro
por: Tougan, Takahiro, et al.
Publicado: (2018)

Automated image analysis in the study of collagenous colitis
por: Fiehn, Anne-Marie Kanstrup, et al.
Publicado: (2016)

Mathematical morphology-based approach to the enhancement of morphological features in medical images
por: Kimori, Yoshitaka
Publicado: (2011)

An extensive endoplasmic reticulum-localised glycoprotein family in trypanosomatids
por: Allison, Harriet, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_do76n31d76ic246a1fni9dr6pg