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Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

The integration of viruses into the human genome is known to be associated with tumorigenesis in many cancers, but the accurate detection of integration breakpoints from short read sequencing data is made difficult by human-viral homologies, viral genome heterogeneity, coverage limitations, and othe...

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Detalles Bibliográficos
Autores principales: Stephens, Zachary, O’Brien, Daniel, Dehankar, Mrunal, Roberts, Lewis R., Iyer, Ravishankar K., Kocher, Jean-Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8457494/
https://www.ncbi.nlm.nih.gov/pubmed/34550971
http://dx.doi.org/10.1371/journal.pone.0250915