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SimFFPE and FilterFFPE: improving structural variant calling in FFPE samples

BACKGROUND: Artifact chimeric reads are enriched in next-generation sequencing data generated from formalin-fixed paraffin-embedded (FFPE) samples. Previous work indicated that these reads are characterized by erroneous split-read support that is interpreted as evidence of structural variants. Thus,...

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Detalles Bibliográficos
Autores principales:	Wei, Lanying, Dugas, Martin, Sandmann, Sarah
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2021
Materias:	Technical Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8458033/ https://www.ncbi.nlm.nih.gov/pubmed/34553214 http://dx.doi.org/10.1093/gigascience/giab065

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