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A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate
We study a population-based cellular model that starts from a single stem cell that divides stochastically to give rise to either daughter stem cells or differentiated daughter cells. There are three main components in the model: nucleus position, the underlying gene-regulatory network, and stochast...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8524154/ https://www.ncbi.nlm.nih.gov/pubmed/34703995 http://dx.doi.org/10.1016/j.isci.2021.103199 |
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author | Jangid, Amit Selvarajan, Suriya Ramaswamy, Ram |
author_facet | Jangid, Amit Selvarajan, Suriya Ramaswamy, Ram |
author_sort | Jangid, Amit |
collection | PubMed |
description | We study a population-based cellular model that starts from a single stem cell that divides stochastically to give rise to either daughter stem cells or differentiated daughter cells. There are three main components in the model: nucleus position, the underlying gene-regulatory network, and stochastic segregation of transcription factors in the daughter cells. The proportion of self-renewal and differentiated cell lines as a function of the nucleus position which in turn decides the plane of cleavage is studied. Both nuclear position and noise play an important role in determining the stem cell genealogies. We have observed both long and short genealogies in model simulation, and these compare well with experimental results from neuroblast and B-cell division. Symmetric divisions are observed in apical nuclei, while asymmetric division occurs when the nucleus is toward the base. In this model, the number of clones decreases over time, although the average clone size increases. |
format | Online Article Text |
id | pubmed-8524154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-85241542021-10-25 A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate Jangid, Amit Selvarajan, Suriya Ramaswamy, Ram iScience Article We study a population-based cellular model that starts from a single stem cell that divides stochastically to give rise to either daughter stem cells or differentiated daughter cells. There are three main components in the model: nucleus position, the underlying gene-regulatory network, and stochastic segregation of transcription factors in the daughter cells. The proportion of self-renewal and differentiated cell lines as a function of the nucleus position which in turn decides the plane of cleavage is studied. Both nuclear position and noise play an important role in determining the stem cell genealogies. We have observed both long and short genealogies in model simulation, and these compare well with experimental results from neuroblast and B-cell division. Symmetric divisions are observed in apical nuclei, while asymmetric division occurs when the nucleus is toward the base. In this model, the number of clones decreases over time, although the average clone size increases. Elsevier 2021-10-02 /pmc/articles/PMC8524154/ /pubmed/34703995 http://dx.doi.org/10.1016/j.isci.2021.103199 Text en © 2021. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Jangid, Amit Selvarajan, Suriya Ramaswamy, Ram A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title | A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title_full | A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title_fullStr | A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title_full_unstemmed | A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title_short | A stochastic model of homeostasis: The roles of noise and nuclear positioning in deciding cell fate |
title_sort | stochastic model of homeostasis: the roles of noise and nuclear positioning in deciding cell fate |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8524154/ https://www.ncbi.nlm.nih.gov/pubmed/34703995 http://dx.doi.org/10.1016/j.isci.2021.103199 |
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