HierCC: a multi-level clustering scheme for population assignments based on core genome MLST

MOTIVATION: Routine infectious disease surveillance is increasingly based on large-scale whole-genome sequencing databases. Real-time surveillance would benefit from immediate assignments of each genome assembly to hierarchical population structures. Here we present pHierCC, a pipeline that defines...

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Detalles Bibliográficos
Autores principales: Zhou, Zhemin, Charlesworth, Jane, Achtman, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545296/
https://www.ncbi.nlm.nih.gov/pubmed/33823553
http://dx.doi.org/10.1093/bioinformatics/btab234

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8545296/
https://www.ncbi.nlm.nih.gov/pubmed/33823553
http://dx.doi.org/10.1093/bioinformatics/btab234

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