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Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation

Inflammatory bowel diseases (IBDs) are genetically complex and exhibit significant inter-patient heterogeneity in disease presentation and therapeutic response. Here, we show that mouse models of IBD exhibit variable responses to inhibition of MK2, a pro-inflammatory serine/threonine kinase, and tha...

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Autores principales: Suarez-Lopez, Lucia, Shui, Bing, Brubaker, Douglas K., Hill, Marza, Bergendorf, Alexander, Changelian, Paul S., Laguna, Aisha, Starchenko, Alina, Lauffenburger, Douglas A., Haigis, Kevin M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609096/
https://www.ncbi.nlm.nih.gov/pubmed/34849469
http://dx.doi.org/10.1016/j.isci.2021.103406
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author Suarez-Lopez, Lucia
Shui, Bing
Brubaker, Douglas K.
Hill, Marza
Bergendorf, Alexander
Changelian, Paul S.
Laguna, Aisha
Starchenko, Alina
Lauffenburger, Douglas A.
Haigis, Kevin M.
author_facet Suarez-Lopez, Lucia
Shui, Bing
Brubaker, Douglas K.
Hill, Marza
Bergendorf, Alexander
Changelian, Paul S.
Laguna, Aisha
Starchenko, Alina
Lauffenburger, Douglas A.
Haigis, Kevin M.
author_sort Suarez-Lopez, Lucia
collection PubMed
description Inflammatory bowel diseases (IBDs) are genetically complex and exhibit significant inter-patient heterogeneity in disease presentation and therapeutic response. Here, we show that mouse models of IBD exhibit variable responses to inhibition of MK2, a pro-inflammatory serine/threonine kinase, and that MK2 inhibition suppresses inflammation by targeting inflammatory monocytes and neutrophils in murine models. Using a computational approach (TransComp-R) that allows for cross-species comparison of transcriptomic features, we identified an IBD patient subgroup that is predicted to respond to MK2 inhibition, and an independent preclinical model of chronic intestinal inflammation predicted to be non-responsive, which we validated experimentally. Thus, cross-species mouse-human translation approaches can help to identify patient subpopulations in which to deploy new therapies.
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spelling pubmed-86090962021-11-29 Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation Suarez-Lopez, Lucia Shui, Bing Brubaker, Douglas K. Hill, Marza Bergendorf, Alexander Changelian, Paul S. Laguna, Aisha Starchenko, Alina Lauffenburger, Douglas A. Haigis, Kevin M. iScience Article Inflammatory bowel diseases (IBDs) are genetically complex and exhibit significant inter-patient heterogeneity in disease presentation and therapeutic response. Here, we show that mouse models of IBD exhibit variable responses to inhibition of MK2, a pro-inflammatory serine/threonine kinase, and that MK2 inhibition suppresses inflammation by targeting inflammatory monocytes and neutrophils in murine models. Using a computational approach (TransComp-R) that allows for cross-species comparison of transcriptomic features, we identified an IBD patient subgroup that is predicted to respond to MK2 inhibition, and an independent preclinical model of chronic intestinal inflammation predicted to be non-responsive, which we validated experimentally. Thus, cross-species mouse-human translation approaches can help to identify patient subpopulations in which to deploy new therapies. Elsevier 2021-11-07 /pmc/articles/PMC8609096/ /pubmed/34849469 http://dx.doi.org/10.1016/j.isci.2021.103406 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Suarez-Lopez, Lucia
Shui, Bing
Brubaker, Douglas K.
Hill, Marza
Bergendorf, Alexander
Changelian, Paul S.
Laguna, Aisha
Starchenko, Alina
Lauffenburger, Douglas A.
Haigis, Kevin M.
Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title_full Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title_fullStr Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title_full_unstemmed Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title_short Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation
title_sort cross-species transcriptomic signatures predict response to mk2 inhibition in mouse models of chronic inflammation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609096/
https://www.ncbi.nlm.nih.gov/pubmed/34849469
http://dx.doi.org/10.1016/j.isci.2021.103406
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