Cargando…
New amino acid substitution matrix brings sequence alignments into agreement with structure matches
Protein sequence matching presently fails to identify many structures that are highly similar, even when they are known to have the same function. The high packing densities in globular proteins lead to interdependent substitutions, which have not previously been considered for amino acid similariti...
Autores principales: | Jia, Kejue, Jernigan, Robert L |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8641535/ https://www.ncbi.nlm.nih.gov/pubmed/33469973 http://dx.doi.org/10.1002/prot.26050 |
Ejemplares similares
-
New alignment method for remote protein sequences by the direct use of pairwise sequence correlations and substitutions
por: Jia, Kejue, et al.
Publicado: (2023) -
Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix
por: Ndhlovu, Andrew, et al.
Publicado: (2015) -
Functional Protein
Dynamics Directly from Sequences
por: Jia, Kejue, et al.
Publicado: (2023) -
RNAlign2D: a rapid method for combined RNA structure and sequence-based alignment using a pseudo-amino acid substitution matrix
por: Woźniak, Tomasz, et al.
Publicado: (2021) -
Optimizing substitution matrix choice and gap parameters for sequence alignment
por: Edgar, Robert C
Publicado: (2009)