scDeepSort: a pre-trained cell-type annotation method for single-cell transcriptomics using deep learning with a weighted graph neural network

Advances in single-cell RNA sequencing (scRNA-seq) have furthered the simultaneous classification of thousands of cells in a single assay based on transcriptome profiling. In most analysis protocols, single-cell type annotation relies on marker genes or RNA-seq profiles, resulting in poor extrapolat...

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Detalles Bibliográficos
Autores principales: Shao, Xin, Yang, Haihong, Zhuang, Xiang, Liao, Jie, Yang, Penghui, Cheng, Junyun, Lu, Xiaoyan, Chen, Huajun, Fan, Xiaohui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Methods Online
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8643674/
https://www.ncbi.nlm.nih.gov/pubmed/34500471
http://dx.doi.org/10.1093/nar/gkab775

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8643674/
https://www.ncbi.nlm.nih.gov/pubmed/34500471
http://dx.doi.org/10.1093/nar/gkab775

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