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Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers

During the racemization of a novel pharmaceutical spiro­cyclic imidazole–amine compound, namely, 6′-bromo-N-(6′-bromo-4-meth­oxy-4′′-methyl-3′H-di­spiro[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-yl)-4-meth­oxy-4′′-methyl-3′H-di­spiro­[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-imine, C(36)H(4...

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Autores principales: Blade, Helen, Horton, Peter N., Morrison, James A., Orton, James B., Sullivan, Rachel A., Coles, Simon J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8647748/
https://www.ncbi.nlm.nih.gov/pubmed/34925905
http://dx.doi.org/10.1107/S205698902100668X
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author Blade, Helen
Horton, Peter N.
Morrison, James A.
Orton, James B.
Sullivan, Rachel A.
Coles, Simon J.
author_facet Blade, Helen
Horton, Peter N.
Morrison, James A.
Orton, James B.
Sullivan, Rachel A.
Coles, Simon J.
author_sort Blade, Helen
collection PubMed
description During the racemization of a novel pharmaceutical spiro­cyclic imidazole–amine compound, namely, 6′-bromo-N-(6′-bromo-4-meth­oxy-4′′-methyl-3′H-di­spiro[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-yl)-4-meth­oxy-4′′-methyl-3′H-di­spiro­[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-imine, C(36)H(41)Br(2)N(5)O(2), two impurities were isolated. These impurities were clearly dimers from mass spectroscopic analysis, however single-crystal diffraction characterization was required for the assignment of stereochemistry. The single-crystal diffraction results revealed subtly different structures to those proposed, due to an unexpected proton transfer. The dimers contain four stereocentres, but two of primary inter­est, and are centrosymmetric, so after careful structure refinement and close inspection it was possible to unambiguously assign the stereochemistry of both the homochiral [(S),(S)- and (R),(R)-] and the heterochiral [(S),(R)- and (R),(S)-] compounds.
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spelling pubmed-86477482021-12-16 Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers Blade, Helen Horton, Peter N. Morrison, James A. Orton, James B. Sullivan, Rachel A. Coles, Simon J. Acta Crystallogr E Crystallogr Commun Research Communications During the racemization of a novel pharmaceutical spiro­cyclic imidazole–amine compound, namely, 6′-bromo-N-(6′-bromo-4-meth­oxy-4′′-methyl-3′H-di­spiro[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-yl)-4-meth­oxy-4′′-methyl-3′H-di­spiro­[cyclo­hexane-1,2′-indene-1′,2′′-imidazol]-5′′-imine, C(36)H(41)Br(2)N(5)O(2), two impurities were isolated. These impurities were clearly dimers from mass spectroscopic analysis, however single-crystal diffraction characterization was required for the assignment of stereochemistry. The single-crystal diffraction results revealed subtly different structures to those proposed, due to an unexpected proton transfer. The dimers contain four stereocentres, but two of primary inter­est, and are centrosymmetric, so after careful structure refinement and close inspection it was possible to unambiguously assign the stereochemistry of both the homochiral [(S),(S)- and (R),(R)-] and the heterochiral [(S),(R)- and (R),(S)-] compounds. International Union of Crystallography 2021-11-18 /pmc/articles/PMC8647748/ /pubmed/34925905 http://dx.doi.org/10.1107/S205698902100668X Text en © Blade et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Communications
Blade, Helen
Horton, Peter N.
Morrison, James A.
Orton, James B.
Sullivan, Rachel A.
Coles, Simon J.
Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title_full Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title_fullStr Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title_full_unstemmed Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title_short Tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2H-imidazol-4-amine dimers
title_sort tautomerism troubles: proton transfer modifies the stereochemical assignments in diastereoisomeric structures of spiro­cyclic 5-methyl-2h-imidazol-4-amine dimers
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8647748/
https://www.ncbi.nlm.nih.gov/pubmed/34925905
http://dx.doi.org/10.1107/S205698902100668X
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