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Residue Folding Degree—Relationship to Secondary Structure Categories and Use as Collective Variable

Recently, we have shown that the residue folding degree, a network-based measure of folded content in proteins, is able to capture backbone conformational transitions related to the formation of secondary structures in molecular dynamics (MD) simulations. In this work, we focus primarily on developi...

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Detalles Bibliográficos
Autores principales: Sladek, Vladimir, Harada, Ryuhei, Shigeta, Yasuteru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8657879/
https://www.ncbi.nlm.nih.gov/pubmed/34884847
http://dx.doi.org/10.3390/ijms222313042