Cargando…

Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection

G-quadruplexes can bind with hemin to form peroxidase-like DNAzymes that are widely used in the design of biosensors. However, the catalytic activity of G-quadruplex/hemin DNAzyme is relatively low compared with natural peroxidase, which hampers its sensitivity and, thus, its application in the dete...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Yun, Ma, Xinao, Zhang, Jingtian, Luo, Feixian, Wang, Wenshu, Cui, Xiaojie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8659037/
https://www.ncbi.nlm.nih.gov/pubmed/34885931
http://dx.doi.org/10.3390/molecules26237352
_version_ 1784612870744440832
author Zhang, Yun
Ma, Xinao
Zhang, Jingtian
Luo, Feixian
Wang, Wenshu
Cui, Xiaojie
author_facet Zhang, Yun
Ma, Xinao
Zhang, Jingtian
Luo, Feixian
Wang, Wenshu
Cui, Xiaojie
author_sort Zhang, Yun
collection PubMed
description G-quadruplexes can bind with hemin to form peroxidase-like DNAzymes that are widely used in the design of biosensors. However, the catalytic activity of G-quadruplex/hemin DNAzyme is relatively low compared with natural peroxidase, which hampers its sensitivity and, thus, its application in the detection of nucleic acids. In this study, we developed a high-sensitivity biosensor targeting norovirus nucleic acids through rationally introducing a dimeric G-quadruplex structure into the DNAzyme. In this strategy, two separate molecular beacons each having a G-quadruplex-forming sequence embedded in the stem structure are brought together through hybridization with a target DNA strand, and thus forms a three-way junction architecture and allows a dimeric G-quadruplex to form, which, upon binding with hemin, has a synergistic enhancement of catalytic activities. This provides a high-sensitivity colorimetric readout by the catalyzing H(2)O(2)-mediated oxidation of 2,2′-azino-bis(3-ethylbenzothiazoline -6-sulfonic acid) diammonium salt (ABTS). Up to 10 nM of target DNA can be detected through colorimetric observation with the naked eye using our strategy. Hence, our approach provides a non-amplifying, non-labeling, simple-operating, cost-effective colorimetric biosensing method for target nucleic acids, such as norovirus-conserved sequence detection, and highlights the further implication of higher-order multimerized G-quadruplex structures in the design of high-sensitivity biosensors.
format Online
Article
Text
id pubmed-8659037
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-86590372021-12-10 Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection Zhang, Yun Ma, Xinao Zhang, Jingtian Luo, Feixian Wang, Wenshu Cui, Xiaojie Molecules Article G-quadruplexes can bind with hemin to form peroxidase-like DNAzymes that are widely used in the design of biosensors. However, the catalytic activity of G-quadruplex/hemin DNAzyme is relatively low compared with natural peroxidase, which hampers its sensitivity and, thus, its application in the detection of nucleic acids. In this study, we developed a high-sensitivity biosensor targeting norovirus nucleic acids through rationally introducing a dimeric G-quadruplex structure into the DNAzyme. In this strategy, two separate molecular beacons each having a G-quadruplex-forming sequence embedded in the stem structure are brought together through hybridization with a target DNA strand, and thus forms a three-way junction architecture and allows a dimeric G-quadruplex to form, which, upon binding with hemin, has a synergistic enhancement of catalytic activities. This provides a high-sensitivity colorimetric readout by the catalyzing H(2)O(2)-mediated oxidation of 2,2′-azino-bis(3-ethylbenzothiazoline -6-sulfonic acid) diammonium salt (ABTS). Up to 10 nM of target DNA can be detected through colorimetric observation with the naked eye using our strategy. Hence, our approach provides a non-amplifying, non-labeling, simple-operating, cost-effective colorimetric biosensing method for target nucleic acids, such as norovirus-conserved sequence detection, and highlights the further implication of higher-order multimerized G-quadruplex structures in the design of high-sensitivity biosensors. MDPI 2021-12-03 /pmc/articles/PMC8659037/ /pubmed/34885931 http://dx.doi.org/10.3390/molecules26237352 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zhang, Yun
Ma, Xinao
Zhang, Jingtian
Luo, Feixian
Wang, Wenshu
Cui, Xiaojie
Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title_full Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title_fullStr Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title_full_unstemmed Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title_short Design of a High-Sensitivity Dimeric G-Quadruplex/Hemin DNAzyme Biosensor for Norovirus Detection
title_sort design of a high-sensitivity dimeric g-quadruplex/hemin dnazyme biosensor for norovirus detection
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8659037/
https://www.ncbi.nlm.nih.gov/pubmed/34885931
http://dx.doi.org/10.3390/molecules26237352
work_keys_str_mv AT zhangyun designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection
AT maxinao designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection
AT zhangjingtian designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection
AT luofeixian designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection
AT wangwenshu designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection
AT cuixiaojie designofahighsensitivitydimericgquadruplexhemindnazymebiosensorfornorovirusdetection