Transposons Hidden in Arabidopsis thaliana Genome Assembly Gaps and Mobilization of Non-Autonomous LTR Retrotransposons Unravelled by Nanotei Pipeline

Long-read data is a great tool to discover new active transposable elements (TEs). However, no ready-to-use tools were available to gather this information from low coverage ONT datasets. Here, we developed a novel pipeline, nanotei, that allows detection of TE-contained structural variants, includi...

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Detalles Bibliográficos
Autores principales: Kirov, Ilya, Merkulov, Pavel, Dudnikov, Maxim, Polkhovskaya, Ekaterina, Komakhin, Roman A., Konstantinov, Zakhar, Gvaramiya, Sofya, Ermolaev, Aleksey, Kudryavtseva, Natalya, Gilyok, Marina, Divashuk, Mikhail G., Karlov, Gennady I., Soloviev, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8704663/
https://www.ncbi.nlm.nih.gov/pubmed/34961152
http://dx.doi.org/10.3390/plants10122681

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8704663/
https://www.ncbi.nlm.nih.gov/pubmed/34961152
http://dx.doi.org/10.3390/plants10122681

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