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Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor

The rise of multidrug resistant (MDR) Gram-negative bacteria has accelerated the development of novel inhibitors of class A and C β-lactamases. Presently, the search for novel compounds with new mechanisms of action is a clinical and scientific priority. To this end, we determined the 2.13-Å resolut...

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Autores principales: Ishikawa, Tatsuya, Furukawa, Nayuta, Caselli, Emilia, Prati, Fabio, Taracila, Magdalena A., Bethel, Christopher R., Ishii, Yoshikazu, Shimizu-Ibuka, Akiko, Bonomo, Robert A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713471/
https://www.ncbi.nlm.nih.gov/pubmed/34970229
http://dx.doi.org/10.3389/fmicb.2021.720036
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author Ishikawa, Tatsuya
Furukawa, Nayuta
Caselli, Emilia
Prati, Fabio
Taracila, Magdalena A.
Bethel, Christopher R.
Ishii, Yoshikazu
Shimizu-Ibuka, Akiko
Bonomo, Robert A.
author_facet Ishikawa, Tatsuya
Furukawa, Nayuta
Caselli, Emilia
Prati, Fabio
Taracila, Magdalena A.
Bethel, Christopher R.
Ishii, Yoshikazu
Shimizu-Ibuka, Akiko
Bonomo, Robert A.
author_sort Ishikawa, Tatsuya
collection PubMed
description The rise of multidrug resistant (MDR) Gram-negative bacteria has accelerated the development of novel inhibitors of class A and C β-lactamases. Presently, the search for novel compounds with new mechanisms of action is a clinical and scientific priority. To this end, we determined the 2.13-Å resolution crystal structure of S02030, a boronic acid transition state inhibitor (BATSI), bound to MOX-1 β-lactamase, a plasmid-borne, expanded-spectrum AmpC β-lactamase (ESAC) and compared this to the previously reported aztreonam (ATM)-bound MOX-1 structure. Superposition of these two complexes shows that S02030 binds in the active-site cavity more deeply than ATM. In contrast, the SO(3) interactions and the positional change of the β-strand amino acids from Lys315 to Asn320 were more prominent in the ATM-bound structure. MICs were performed using a fixed concentration of S02030 (4 μg/ml) as a proof of principle. Microbiological evaluation against a laboratory strain of Escherichia coli expressing MOX-1 revealed that MICs against ceftazidime are reduced from 2.0 to 0.12 μg/ml when S02030 is added at a concentration of 4 μg/ml. The IC(50) and K(i) of S02030 vs. MOX-1 were 1.25 ± 0.34 and 0.56 ± 0.03 μM, respectively. Monobactams such as ATM can serve as informative templates for design of mechanism-based inhibitors such as S02030 against ESAC β-lactamases.
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spelling pubmed-87134712021-12-29 Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor Ishikawa, Tatsuya Furukawa, Nayuta Caselli, Emilia Prati, Fabio Taracila, Magdalena A. Bethel, Christopher R. Ishii, Yoshikazu Shimizu-Ibuka, Akiko Bonomo, Robert A. Front Microbiol Microbiology The rise of multidrug resistant (MDR) Gram-negative bacteria has accelerated the development of novel inhibitors of class A and C β-lactamases. Presently, the search for novel compounds with new mechanisms of action is a clinical and scientific priority. To this end, we determined the 2.13-Å resolution crystal structure of S02030, a boronic acid transition state inhibitor (BATSI), bound to MOX-1 β-lactamase, a plasmid-borne, expanded-spectrum AmpC β-lactamase (ESAC) and compared this to the previously reported aztreonam (ATM)-bound MOX-1 structure. Superposition of these two complexes shows that S02030 binds in the active-site cavity more deeply than ATM. In contrast, the SO(3) interactions and the positional change of the β-strand amino acids from Lys315 to Asn320 were more prominent in the ATM-bound structure. MICs were performed using a fixed concentration of S02030 (4 μg/ml) as a proof of principle. Microbiological evaluation against a laboratory strain of Escherichia coli expressing MOX-1 revealed that MICs against ceftazidime are reduced from 2.0 to 0.12 μg/ml when S02030 is added at a concentration of 4 μg/ml. The IC(50) and K(i) of S02030 vs. MOX-1 were 1.25 ± 0.34 and 0.56 ± 0.03 μM, respectively. Monobactams such as ATM can serve as informative templates for design of mechanism-based inhibitors such as S02030 against ESAC β-lactamases. Frontiers Media S.A. 2021-12-14 /pmc/articles/PMC8713471/ /pubmed/34970229 http://dx.doi.org/10.3389/fmicb.2021.720036 Text en Copyright © 2021 Ishikawa, Furukawa, Caselli, Prati, Taracila, Bethel, Ishii, Shimizu-Ibuka and Bonomo. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Ishikawa, Tatsuya
Furukawa, Nayuta
Caselli, Emilia
Prati, Fabio
Taracila, Magdalena A.
Bethel, Christopher R.
Ishii, Yoshikazu
Shimizu-Ibuka, Akiko
Bonomo, Robert A.
Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title_full Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title_fullStr Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title_full_unstemmed Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title_short Insights Into the Inhibition of MOX-1 β-Lactamase by S02030, a Boronic Acid Transition State Inhibitor
title_sort insights into the inhibition of mox-1 β-lactamase by s02030, a boronic acid transition state inhibitor
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8713471/
https://www.ncbi.nlm.nih.gov/pubmed/34970229
http://dx.doi.org/10.3389/fmicb.2021.720036
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