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An optimized FM-index library for nucleotide and amino acid search
BACKGROUND: Pattern matching is a key step in a variety of biological sequence analysis pipelines. The FM-index is a compressed data structure for pattern matching, with search run time that is independent of the length of the database text. Implementation of the FM-index is reasonably complicated,...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2021
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8719400/ https://www.ncbi.nlm.nih.gov/pubmed/34972525 http://dx.doi.org/10.1186/s13015-021-00204-6 |