Bacterial genomic epidemiology with mixed samples

Genomic epidemiology is a tool for tracing transmission of pathogens based on whole-genome sequencing. We introduce the mGEMS pipeline for genomic epidemiology with plate sweeps representing mixed samples of a target pathogen, opening the possibility to sequence all colonies on selective plates with...

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Detalles Bibliográficos
Autores principales: Mäklin, Tommi, Kallonen, Teemu, Alanko, Jarno, Samuelsen, Ørjan, Hegstad, Kristin, Mäkinen, Veli, Corander, Jukka, Heinz, Eva, Honkela, Antti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Microbiology Society 2021
Materias:
Methods
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8743562/
https://www.ncbi.nlm.nih.gov/pubmed/34779765
http://dx.doi.org/10.1099/mgen.0.000691

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8743562/
https://www.ncbi.nlm.nih.gov/pubmed/34779765
http://dx.doi.org/10.1099/mgen.0.000691

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