Metagenomic Geolocation Using Read Signatures

We present a novel approach to the Metagenomic Geolocation Challenge based on random projection of the sample reads from each location. This approach explores the direct use of k-mer composition to characterise samples so that we can avoid the computationally demanding step of aligning reads to avai...

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Detalles Bibliográficos
Autores principales: Chappell , Timothy, Geva , Shlomo, Hogan , James M., Lovell , David, Trotman , Andrew, Perrin , Dimitri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Genetics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8918732/
https://www.ncbi.nlm.nih.gov/pubmed/35295949
http://dx.doi.org/10.3389/fgene.2022.643592

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8918732/
https://www.ncbi.nlm.nih.gov/pubmed/35295949
http://dx.doi.org/10.3389/fgene.2022.643592

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