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Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9

The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra fi...

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Autores principales: Biegler, Matthew T., Fedrigo, Olivier, Collier, Paul, Mountcastle, Jacquelyn, Haase, Bettina, Tilgner, Hagen U., Jarvis, Erich D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921232/
https://www.ncbi.nlm.nih.gov/pubmed/35288582
http://dx.doi.org/10.1038/s41598-022-07434-7
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author Biegler, Matthew T.
Fedrigo, Olivier
Collier, Paul
Mountcastle, Jacquelyn
Haase, Bettina
Tilgner, Hagen U.
Jarvis, Erich D.
author_facet Biegler, Matthew T.
Fedrigo, Olivier
Collier, Paul
Mountcastle, Jacquelyn
Haase, Bettina
Tilgner, Hagen U.
Jarvis, Erich D.
author_sort Biegler, Matthew T.
collection PubMed
description The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra finch embryonic fibroblasts using the SV40 large and small T antigens. This cell line demonstrates an improvement over previous songbird cell lines through continuous and density-independent growth, allowing for indefinite culture and monoclonal line derivation. Cytogenetic, genomic, and transcriptomic profiling established the provenance of this cell line and identified the expression of genes relevant to ongoing songbird research. Using this cell line, we disrupted endogenous gene sequences using S.aureus Cas9 and confirmed a stress-dependent localization response of a song system specialized gene, SAP30L. The utility of CFS414 cells enhances the comprehensive molecular potential of the zebra finch and validates cell immortalization strategies in a songbird species.
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spelling pubmed-89212322022-03-16 Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 Biegler, Matthew T. Fedrigo, Olivier Collier, Paul Mountcastle, Jacquelyn Haase, Bettina Tilgner, Hagen U. Jarvis, Erich D. Sci Rep Article The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra finch embryonic fibroblasts using the SV40 large and small T antigens. This cell line demonstrates an improvement over previous songbird cell lines through continuous and density-independent growth, allowing for indefinite culture and monoclonal line derivation. Cytogenetic, genomic, and transcriptomic profiling established the provenance of this cell line and identified the expression of genes relevant to ongoing songbird research. Using this cell line, we disrupted endogenous gene sequences using S.aureus Cas9 and confirmed a stress-dependent localization response of a song system specialized gene, SAP30L. The utility of CFS414 cells enhances the comprehensive molecular potential of the zebra finch and validates cell immortalization strategies in a songbird species. Nature Publishing Group UK 2022-03-14 /pmc/articles/PMC8921232/ /pubmed/35288582 http://dx.doi.org/10.1038/s41598-022-07434-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Biegler, Matthew T.
Fedrigo, Olivier
Collier, Paul
Mountcastle, Jacquelyn
Haase, Bettina
Tilgner, Hagen U.
Jarvis, Erich D.
Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title_full Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title_fullStr Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title_full_unstemmed Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title_short Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
title_sort induction of an immortalized songbird cell line allows for gene characterization and knockout by crispr-cas9
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921232/
https://www.ncbi.nlm.nih.gov/pubmed/35288582
http://dx.doi.org/10.1038/s41598-022-07434-7
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