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Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9
The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra fi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921232/ https://www.ncbi.nlm.nih.gov/pubmed/35288582 http://dx.doi.org/10.1038/s41598-022-07434-7 |
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author | Biegler, Matthew T. Fedrigo, Olivier Collier, Paul Mountcastle, Jacquelyn Haase, Bettina Tilgner, Hagen U. Jarvis, Erich D. |
author_facet | Biegler, Matthew T. Fedrigo, Olivier Collier, Paul Mountcastle, Jacquelyn Haase, Bettina Tilgner, Hagen U. Jarvis, Erich D. |
author_sort | Biegler, Matthew T. |
collection | PubMed |
description | The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra finch embryonic fibroblasts using the SV40 large and small T antigens. This cell line demonstrates an improvement over previous songbird cell lines through continuous and density-independent growth, allowing for indefinite culture and monoclonal line derivation. Cytogenetic, genomic, and transcriptomic profiling established the provenance of this cell line and identified the expression of genes relevant to ongoing songbird research. Using this cell line, we disrupted endogenous gene sequences using S.aureus Cas9 and confirmed a stress-dependent localization response of a song system specialized gene, SAP30L. The utility of CFS414 cells enhances the comprehensive molecular potential of the zebra finch and validates cell immortalization strategies in a songbird species. |
format | Online Article Text |
id | pubmed-8921232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-89212322022-03-16 Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 Biegler, Matthew T. Fedrigo, Olivier Collier, Paul Mountcastle, Jacquelyn Haase, Bettina Tilgner, Hagen U. Jarvis, Erich D. Sci Rep Article The zebra finch is one of the most commonly studied songbirds in biology, particularly in genomics, neuroscience and vocal communication. However, this species lacks a robust cell line for molecular biology research and reagent optimization. We generated a cell line, designated CFS414, from zebra finch embryonic fibroblasts using the SV40 large and small T antigens. This cell line demonstrates an improvement over previous songbird cell lines through continuous and density-independent growth, allowing for indefinite culture and monoclonal line derivation. Cytogenetic, genomic, and transcriptomic profiling established the provenance of this cell line and identified the expression of genes relevant to ongoing songbird research. Using this cell line, we disrupted endogenous gene sequences using S.aureus Cas9 and confirmed a stress-dependent localization response of a song system specialized gene, SAP30L. The utility of CFS414 cells enhances the comprehensive molecular potential of the zebra finch and validates cell immortalization strategies in a songbird species. Nature Publishing Group UK 2022-03-14 /pmc/articles/PMC8921232/ /pubmed/35288582 http://dx.doi.org/10.1038/s41598-022-07434-7 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Biegler, Matthew T. Fedrigo, Olivier Collier, Paul Mountcastle, Jacquelyn Haase, Bettina Tilgner, Hagen U. Jarvis, Erich D. Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title | Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title_full | Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title_fullStr | Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title_full_unstemmed | Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title_short | Induction of an immortalized songbird cell line allows for gene characterization and knockout by CRISPR-Cas9 |
title_sort | induction of an immortalized songbird cell line allows for gene characterization and knockout by crispr-cas9 |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8921232/ https://www.ncbi.nlm.nih.gov/pubmed/35288582 http://dx.doi.org/10.1038/s41598-022-07434-7 |
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